Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24718 | 3' | -62.4 | NC_005264.1 | + | 6250 | 0.66 | 0.642136 |
Target: 5'- uGCCgCCUCCGucGCGGUcGUcGCCGCc -3' miRNA: 3'- -UGGaGGAGGCuaCGCCGcCA-CGGCGu -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 851 | 0.66 | 0.632336 |
Target: 5'- gGCCUuucccCCUCCGA---GGCGuUGCCGCGc -3' miRNA: 3'- -UGGA-----GGAGGCUacgCCGCcACGGCGU- -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 143297 | 0.66 | 0.602962 |
Target: 5'- uACCUCgCUCCGGcaacGuUGGCGGcgGCCGUc -3' miRNA: 3'- -UGGAG-GAGGCUa---C-GCCGCCa-CGGCGu -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 33981 | 0.67 | 0.581525 |
Target: 5'- gACCcUCUCgCGAacgUGCGGCGGcccauguagccgGCCGCGu -3' miRNA: 3'- -UGGaGGAG-GCU---ACGCCGCCa-----------CGGCGU- -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 12951 | 0.67 | 0.54491 |
Target: 5'- cGCCguugCCUaCCGG-GCGGCGcGcGCCGCc -3' miRNA: 3'- -UGGa---GGA-GGCUaCGCCGC-CaCGGCGu -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 104081 | 0.67 | 0.54491 |
Target: 5'- cACCgcgcgugcgCCUCUGAUaGCGcaGCGGcgGCCGCGg -3' miRNA: 3'- -UGGa--------GGAGGCUA-CGC--CGCCa-CGGCGU- -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 3789 | 0.67 | 0.54491 |
Target: 5'- gACCgCCgCCGAUcugcGUGGCGGU-CCGCGa -3' miRNA: 3'- -UGGaGGaGGCUA----CGCCGCCAcGGCGU- -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 153856 | 0.68 | 0.535392 |
Target: 5'- uACCUUUgCCGAguucucGCGGUuuuGGUGCUGCAg -3' miRNA: 3'- -UGGAGGaGGCUa-----CGCCG---CCACGGCGU- -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 125281 | 0.68 | 0.516539 |
Target: 5'- ---cCCUCCGcgGCGGCGcGcUGUCGCu -3' miRNA: 3'- uggaGGAGGCuaCGCCGC-C-ACGGCGu -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 153692 | 0.7 | 0.401918 |
Target: 5'- ---cCCUCCGAgacaucucugGUGGCGGUGuuGCGu -3' miRNA: 3'- uggaGGAGGCUa---------CGCCGCCACggCGU- -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 96653 | 0.71 | 0.347257 |
Target: 5'- cACCgCCcgCCGAUGCgGGCGGUG-CGCu -3' miRNA: 3'- -UGGaGGa-GGCUACG-CCGCCACgGCGu -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 52950 | 0.72 | 0.291559 |
Target: 5'- cGCCgaugcagcgCCUCUac-GCGGCGGUGCUGCGa -3' miRNA: 3'- -UGGa--------GGAGGcuaCGCCGCCACGGCGU- -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 38374 | 0.74 | 0.235341 |
Target: 5'- gACCUCCUCCGGcgagaGCGGCGacgccgagacagaUGCCGCGu -3' miRNA: 3'- -UGGAGGAGGCUa----CGCCGCc------------ACGGCGU- -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 157675 | 0.74 | 0.228858 |
Target: 5'- gGCCUCCgaaaggcuucggaCGAUGCGGCGcG-GCCGCGc -3' miRNA: 3'- -UGGAGGag-----------GCUACGCCGC-CaCGGCGU- -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 138479 | 0.75 | 0.206368 |
Target: 5'- uACUUCgUUCCGuaccUGCGGCGGuUGCCGCGc -3' miRNA: 3'- -UGGAG-GAGGCu---ACGCCGCC-ACGGCGU- -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 119599 | 0.66 | 0.651928 |
Target: 5'- aACCUCagUCCag-GCGGCacGUGCCGCc -3' miRNA: 3'- -UGGAGg-AGGcuaCGCCGc-CACGGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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