miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24718 5' -52.6 NC_005264.1 + 115340 0.66 0.981453
Target:  5'- gUCGGGCUCUggAGCUCGagGGGCc--- -3'
miRNA:   3'- gAGUUCGAGG--UCGAGUagCCUGcuuc -5'
24718 5' -52.6 NC_005264.1 + 122922 0.66 0.981453
Target:  5'- gUCGAGUUCUcuGGCUaCA-CGGGCGAc- -3'
miRNA:   3'- gAGUUCGAGG--UCGA-GUaGCCUGCUuc -5'
24718 5' -52.6 NC_005264.1 + 3896 0.66 0.981453
Target:  5'- gUCGAGUUCUcuGGCUaCA-CGGGCGAc- -3'
miRNA:   3'- gAGUUCGAGG--UCGA-GUaGCCUGCUuc -5'
24718 5' -52.6 NC_005264.1 + 17673 0.66 0.981453
Target:  5'- aCUCAgAGUcacgCCGGCUCGUCagccgcuGGCGGAGg -3'
miRNA:   3'- -GAGU-UCGa---GGUCGAGUAGc------CUGCUUC- -5'
24718 5' -52.6 NC_005264.1 + 84973 0.66 0.981453
Target:  5'- -cCAGGCUgCuGCguuagCGUCGuGGCGGAGa -3'
miRNA:   3'- gaGUUCGAgGuCGa----GUAGC-CUGCUUC- -5'
24718 5' -52.6 NC_005264.1 + 64932 0.66 0.97926
Target:  5'- gCUCGAuGUUCCAGC-CGUCGGGg---- -3'
miRNA:   3'- -GAGUU-CGAGGUCGaGUAGCCUgcuuc -5'
24718 5' -52.6 NC_005264.1 + 85288 0.66 0.97688
Target:  5'- gUCAAGUUCCccgAGCUCAaauacgCGGAgGAc- -3'
miRNA:   3'- gAGUUCGAGG---UCGAGUa-----GCCUgCUuc -5'
24718 5' -52.6 NC_005264.1 + 25724 0.67 0.96534
Target:  5'- uUCGAGaccgcguaCCAGUUaggGUCGGACGGAGa -3'
miRNA:   3'- gAGUUCga------GGUCGAg--UAGCCUGCUUC- -5'
24718 5' -52.6 NC_005264.1 + 77305 0.67 0.961915
Target:  5'- gUC-AGCUUCAGgUCG-CGGGCGAGu -3'
miRNA:   3'- gAGuUCGAGGUCgAGUaGCCUGCUUc -5'
24718 5' -52.6 NC_005264.1 + 120702 0.68 0.954376
Target:  5'- cCUCGcGCcgacaaagCCGGCg-GUCGGGCGGAGg -3'
miRNA:   3'- -GAGUuCGa-------GGUCGagUAGCCUGCUUC- -5'
24718 5' -52.6 NC_005264.1 + 47721 0.7 0.866757
Target:  5'- -gCAGGCgCCAGCUCA-CGGACa--- -3'
miRNA:   3'- gaGUUCGaGGUCGAGUaGCCUGcuuc -5'
24718 5' -52.6 NC_005264.1 + 150536 0.71 0.859014
Target:  5'- gUCAggcGGCUCCAGg-C-UCGGGCGggGa -3'
miRNA:   3'- gAGU---UCGAGGUCgaGuAGCCUGCuuC- -5'
24718 5' -52.6 NC_005264.1 + 31509 0.71 0.859014
Target:  5'- gUCAggcGGCUCCAGg-C-UCGGGCGggGa -3'
miRNA:   3'- gAGU---UCGAGGUCgaGuAGCCUGCuuC- -5'
24718 5' -52.6 NC_005264.1 + 44022 0.71 0.825971
Target:  5'- cCUCAuGCgUCCAGC-CGUUGGGCGuAGa -3'
miRNA:   3'- -GAGUuCG-AGGUCGaGUAGCCUGCuUC- -5'
24718 5' -52.6 NC_005264.1 + 13367 0.74 0.71153
Target:  5'- gCUCGAGCgacucgUCUAGCUCAUCGcgcGACGAu- -3'
miRNA:   3'- -GAGUUCG------AGGUCGAGUAGC---CUGCUuc -5'
24718 5' -52.6 NC_005264.1 + 133466 1.08 0.007017
Target:  5'- gCUCAAGCUCCAGCUCAUCGGACGAAGc -3'
miRNA:   3'- -GAGUUCGAGGUCGAGUAGCCUGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.