Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24718 | 5' | -52.6 | NC_005264.1 | + | 115340 | 0.66 | 0.981453 |
Target: 5'- gUCGGGCUCUggAGCUCGagGGGCc--- -3' miRNA: 3'- gAGUUCGAGG--UCGAGUagCCUGcuuc -5' |
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24718 | 5' | -52.6 | NC_005264.1 | + | 64932 | 0.66 | 0.97926 |
Target: 5'- gCUCGAuGUUCCAGC-CGUCGGGg---- -3' miRNA: 3'- -GAGUU-CGAGGUCGaGUAGCCUgcuuc -5' |
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24718 | 5' | -52.6 | NC_005264.1 | + | 85288 | 0.66 | 0.97688 |
Target: 5'- gUCAAGUUCCccgAGCUCAaauacgCGGAgGAc- -3' miRNA: 3'- gAGUUCGAGG---UCGAGUa-----GCCUgCUuc -5' |
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24718 | 5' | -52.6 | NC_005264.1 | + | 122922 | 0.66 | 0.981453 |
Target: 5'- gUCGAGUUCUcuGGCUaCA-CGGGCGAc- -3' miRNA: 3'- gAGUUCGAGG--UCGA-GUaGCCUGCUuc -5' |
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24718 | 5' | -52.6 | NC_005264.1 | + | 3896 | 0.66 | 0.981453 |
Target: 5'- gUCGAGUUCUcuGGCUaCA-CGGGCGAc- -3' miRNA: 3'- gAGUUCGAGG--UCGA-GUaGCCUGCUuc -5' |
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24718 | 5' | -52.6 | NC_005264.1 | + | 84973 | 0.66 | 0.981453 |
Target: 5'- -cCAGGCUgCuGCguuagCGUCGuGGCGGAGa -3' miRNA: 3'- gaGUUCGAgGuCGa----GUAGC-CUGCUUC- -5' |
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24718 | 5' | -52.6 | NC_005264.1 | + | 17673 | 0.66 | 0.981453 |
Target: 5'- aCUCAgAGUcacgCCGGCUCGUCagccgcuGGCGGAGg -3' miRNA: 3'- -GAGU-UCGa---GGUCGAGUAGc------CUGCUUC- -5' |
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24718 | 5' | -52.6 | NC_005264.1 | + | 25724 | 0.67 | 0.96534 |
Target: 5'- uUCGAGaccgcguaCCAGUUaggGUCGGACGGAGa -3' miRNA: 3'- gAGUUCga------GGUCGAg--UAGCCUGCUUC- -5' |
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24718 | 5' | -52.6 | NC_005264.1 | + | 77305 | 0.67 | 0.961915 |
Target: 5'- gUC-AGCUUCAGgUCG-CGGGCGAGu -3' miRNA: 3'- gAGuUCGAGGUCgAGUaGCCUGCUUc -5' |
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24718 | 5' | -52.6 | NC_005264.1 | + | 120702 | 0.68 | 0.954376 |
Target: 5'- cCUCGcGCcgacaaagCCGGCg-GUCGGGCGGAGg -3' miRNA: 3'- -GAGUuCGa-------GGUCGagUAGCCUGCUUC- -5' |
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24718 | 5' | -52.6 | NC_005264.1 | + | 47721 | 0.7 | 0.866757 |
Target: 5'- -gCAGGCgCCAGCUCA-CGGACa--- -3' miRNA: 3'- gaGUUCGaGGUCGAGUaGCCUGcuuc -5' |
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24718 | 5' | -52.6 | NC_005264.1 | + | 150536 | 0.71 | 0.859014 |
Target: 5'- gUCAggcGGCUCCAGg-C-UCGGGCGggGa -3' miRNA: 3'- gAGU---UCGAGGUCgaGuAGCCUGCuuC- -5' |
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24718 | 5' | -52.6 | NC_005264.1 | + | 44022 | 0.71 | 0.825971 |
Target: 5'- cCUCAuGCgUCCAGC-CGUUGGGCGuAGa -3' miRNA: 3'- -GAGUuCG-AGGUCGaGUAGCCUGCuUC- -5' |
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24718 | 5' | -52.6 | NC_005264.1 | + | 31509 | 0.71 | 0.859014 |
Target: 5'- gUCAggcGGCUCCAGg-C-UCGGGCGggGa -3' miRNA: 3'- gAGU---UCGAGGUCgaGuAGCCUGCuuC- -5' |
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24718 | 5' | -52.6 | NC_005264.1 | + | 13367 | 0.74 | 0.71153 |
Target: 5'- gCUCGAGCgacucgUCUAGCUCAUCGcgcGACGAu- -3' miRNA: 3'- -GAGUUCG------AGGUCGAGUAGC---CUGCUuc -5' |
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24718 | 5' | -52.6 | NC_005264.1 | + | 133466 | 1.08 | 0.007017 |
Target: 5'- gCUCAAGCUCCAGCUCAUCGGACGAAGc -3' miRNA: 3'- -GAGUUCGAGGUCGAGUAGCCUGCUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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