miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24719 3' -55.4 NC_005264.1 + 38830 0.66 0.938336
Target:  5'- cGAGAAcGACGaCGAuGCGCGgGCaCCGUg -3'
miRNA:   3'- -UUCUU-UUGCaGCUcCGUGCgCG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 131673 0.66 0.938336
Target:  5'- cAGAc--CGUUGGcGGCACGUcgGCUCGCa -3'
miRNA:   3'- uUCUuuuGCAGCU-CCGUGCG--CGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 48382 0.66 0.938336
Target:  5'- -----cGCGUCGAGGCGCucgaCGUUCGUc -3'
miRNA:   3'- uucuuuUGCAGCUCCGUGc---GCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 157856 0.66 0.938336
Target:  5'- cGAGAAcGACGaCGAuGCGCGgGCaCCGUg -3'
miRNA:   3'- -UUCUU-UUGCaGCUcCGUGCgCG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 22667 0.66 0.936889
Target:  5'- uGGggGcgguCGUCGGGGUagaaaguuugcguuACGCgaagaaucGCCCGCu -3'
miRNA:   3'- uUCuuUu---GCAGCUCCG--------------UGCG--------CGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 140271 0.66 0.93542
Target:  5'- aAAGcAGAACGgcuagCGAGGCuacuCGCGguuucuguaucuuucCCCGCc -3'
miRNA:   3'- -UUC-UUUUGCa----GCUCCGu---GCGC---------------GGGCG- -5'
24719 3' -55.4 NC_005264.1 + 72436 0.66 0.933427
Target:  5'- -cGAAcGCGUCGAacacguuguaucGGCGgGCG-CCGCc -3'
miRNA:   3'- uuCUUuUGCAGCU------------CCGUgCGCgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 18748 0.66 0.933427
Target:  5'- cGAGAAAGa--CGAGGCGCGC-UCCGa -3'
miRNA:   3'- -UUCUUUUgcaGCUCCGUGCGcGGGCg -5'
24719 3' -55.4 NC_005264.1 + 20518 0.66 0.933427
Target:  5'- cGAG-AAGCca-GGGGCACgcguuGCGCCCGUu -3'
miRNA:   3'- -UUCuUUUGcagCUCCGUG-----CGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 32873 0.66 0.928279
Target:  5'- gAGGuGAACcuUgGAGGCAgGCGCCCa- -3'
miRNA:   3'- -UUCuUUUGc-AgCUCCGUgCGCGGGcg -5'
24719 3' -55.4 NC_005264.1 + 80113 0.66 0.928279
Target:  5'- -cGAGGAUGaCGGGGCAaGCGCagaGCa -3'
miRNA:   3'- uuCUUUUGCaGCUCCGUgCGCGgg-CG- -5'
24719 3' -55.4 NC_005264.1 + 36282 0.66 0.928279
Target:  5'- uGGAccACGUCuucgcGGCGCGaagaGCCCGUa -3'
miRNA:   3'- uUCUuuUGCAGcu---CCGUGCg---CGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 154114 0.66 0.928279
Target:  5'- cGGggGGCGagcCGAaacggcGGcCACGCGCgCGCa -3'
miRNA:   3'- uUCuuUUGCa--GCU------CC-GUGCGCGgGCG- -5'
24719 3' -55.4 NC_005264.1 + 94566 0.66 0.928279
Target:  5'- -uGggGACGcaaaGAGGCggcagcagcagGC-CGCCCGCg -3'
miRNA:   3'- uuCuuUUGCag--CUCCG-----------UGcGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 98103 0.66 0.928279
Target:  5'- -cGAuccuuGCG-CGGGGCACGgCGCCgaGCc -3'
miRNA:   3'- uuCUuu---UGCaGCUCCGUGC-GCGGg-CG- -5'
24719 3' -55.4 NC_005264.1 + 139553 0.66 0.92289
Target:  5'- -cGAuguuuGCGcUCGcuGCACGCGCgCGCg -3'
miRNA:   3'- uuCUuu---UGC-AGCucCGUGCGCGgGCG- -5'
24719 3' -55.4 NC_005264.1 + 117423 0.66 0.92289
Target:  5'- -cGggGcUGUCGcGGCGCGCaggGCgCCGCc -3'
miRNA:   3'- uuCuuUuGCAGCuCCGUGCG---CG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 76642 0.66 0.92289
Target:  5'- aGAGAAGACcaUCGAGGCcgAUGCGgCCa- -3'
miRNA:   3'- -UUCUUUUGc-AGCUCCG--UGCGCgGGcg -5'
24719 3' -55.4 NC_005264.1 + 112995 0.66 0.92289
Target:  5'- cAGAAGGCuG-CGGcGUACGUGCUCGCg -3'
miRNA:   3'- uUCUUUUG-CaGCUcCGUGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 30851 0.66 0.92289
Target:  5'- ------uCGUCGGcggcGGCGCGCcGCCCGg -3'
miRNA:   3'- uucuuuuGCAGCU----CCGUGCG-CGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.