miRNA display CGI


Results 61 - 80 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24719 3' -55.4 NC_005264.1 + 125094 0.67 0.878546
Target:  5'- -cGAAcucGCGUCGAcgguGGCGgGUGCCUGUu -3'
miRNA:   3'- uuCUUu--UGCAGCU----CCGUgCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 49786 0.68 0.835277
Target:  5'- gAGGAGGgcacggacuaccuccGCGUCGAGGUGCaGgGCCgCGUa -3'
miRNA:   3'- -UUCUUU---------------UGCAGCUCCGUG-CgCGG-GCG- -5'
24719 3' -55.4 NC_005264.1 + 142695 0.68 0.839394
Target:  5'- ---uGGGCGcCGGcGGCGCGCcacgccuGCCCGCa -3'
miRNA:   3'- uucuUUUGCaGCU-CCGUGCG-------CGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 158841 0.68 0.840212
Target:  5'- uGGugGGCGagGAGGCAUGUG-CCGCc -3'
miRNA:   3'- uUCuuUUGCagCUCCGUGCGCgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 58791 0.68 0.866845
Target:  5'- cAGAGGAUGUCGGcaaaccgauuuccgcGGCGCGCGUCa-- -3'
miRNA:   3'- uUCUUUUGCAGCU---------------CCGUGCGCGGgcg -5'
24719 3' -55.4 NC_005264.1 + 94500 0.68 0.871298
Target:  5'- -cGucAACGUCuGGGCACGaGUCCGUa -3'
miRNA:   3'- uuCuuUUGCAGcUCCGUGCgCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 24155 0.68 0.856162
Target:  5'- aAAGuauGGCGagUCGAGGCugcUGCGgCCGCg -3'
miRNA:   3'- -UUCuu-UUGC--AGCUCCGu--GCGCgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 26693 0.68 0.840212
Target:  5'- aAAGAAuuuuauuguuUGUCGGGGCGCauGCGCuccCCGCg -3'
miRNA:   3'- -UUCUUuu--------GCAGCUCCGUG--CGCG---GGCG- -5'
24719 3' -55.4 NC_005264.1 + 122618 0.68 0.831949
Target:  5'- uAGAcuGCGUCGuGGaauaCAUGCagGCCCGCu -3'
miRNA:   3'- uUCUuuUGCAGCuCC----GUGCG--CGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 81275 0.68 0.871298
Target:  5'- cAAGGuuACGcUCaccaAGGUGCuGCGCCCGCu -3'
miRNA:   3'- -UUCUuuUGC-AGc---UCCGUG-CGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 154951 0.68 0.831949
Target:  5'- uGGggGACGUCGua-CGCGCGCagaUGCg -3'
miRNA:   3'- uUCuuUUGCAGCuccGUGCGCGg--GCG- -5'
24719 3' -55.4 NC_005264.1 + 39815 0.68 0.840212
Target:  5'- uGGugGGCGagGAGGCAUGUG-CCGCc -3'
miRNA:   3'- uUCuuUUGCagCUCCGUGCGCgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 64853 0.68 0.848285
Target:  5'- cAGGAAcACGaagucCGGGGCugGgagauUGCCCGCa -3'
miRNA:   3'- -UUCUUuUGCa----GCUCCGugC-----GCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 113685 0.68 0.85146
Target:  5'- -cGuGAugGUCGGGGUGCaaggcuugggcagagGCGCCuCGCa -3'
miRNA:   3'- uuCuUUugCAGCUCCGUG---------------CGCGG-GCG- -5'
24719 3' -55.4 NC_005264.1 + 54225 0.68 0.840212
Target:  5'- uAGAGGccugUGUCGAGGCG-GC-CCCGCg -3'
miRNA:   3'- uUCUUUu---GCAGCUCCGUgCGcGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 140694 0.68 0.855383
Target:  5'- -----cGCGgCGcaaucuaAGGCGCGCGUCCGCu -3'
miRNA:   3'- uucuuuUGCaGC-------UCCGUGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 9502 0.68 0.856162
Target:  5'- cAGccAGCGUC-AGGCGCGgCGCCCu- -3'
miRNA:   3'- uUCuuUUGCAGcUCCGUGC-GCGGGcg -5'
24719 3' -55.4 NC_005264.1 + 109271 0.68 0.863835
Target:  5'- -----cGCGUCG-GGCGCGuCGUaCCGCg -3'
miRNA:   3'- uucuuuUGCAGCuCCGUGC-GCG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 24407 0.68 0.863077
Target:  5'- cAAGuAAGCG-CGcGGCGCGUuaaacacGCCCGCc -3'
miRNA:   3'- -UUCuUUUGCaGCuCCGUGCG-------CGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 131601 0.68 0.871298
Target:  5'- gGAGGGAGCGgcgCGcguGGGCGCGCGCg--- -3'
miRNA:   3'- -UUCUUUUGCa--GC---UCCGUGCGCGggcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.