miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24719 3' -55.4 NC_005264.1 + 133549 1.1 0.002923
Target:  5'- aAAGAAAACGUCGAGGCACGCGCCCGCg -3'
miRNA:   3'- -UUCUUUUGCAGCUCCGUGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 34122 0.87 0.09604
Target:  5'- -cGAAAcaGCGUCGAGGCGCGaGCCCGCc -3'
miRNA:   3'- uuCUUU--UGCAGCUCCGUGCgCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 153149 0.87 0.09604
Target:  5'- -cGAAAcaGCGUCGAGGCGCGaGCCCGCc -3'
miRNA:   3'- uuCUUU--UGCAGCUCCGUGCgCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 122445 0.77 0.373654
Target:  5'- gGGGGAggGACGUa-GGGC-CGCGCCCGCg -3'
miRNA:   3'- -UUCUU--UUGCAgcUCCGuGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 3418 0.77 0.373654
Target:  5'- gGGGGAggGACGUa-GGGC-CGCGCCCGCg -3'
miRNA:   3'- -UUCUU--UUGCAgcUCCGuGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 132376 0.77 0.381883
Target:  5'- cGAGGauGAACGUCGGGGC-CGagccgggGCCCGCg -3'
miRNA:   3'- -UUCU--UUUGCAGCUCCGuGCg------CGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 13349 0.77 0.381883
Target:  5'- cGAGGauGAACGUCGGGGC-CGagccgggGCCCGCg -3'
miRNA:   3'- -UUCU--UUUGCAGCUCCGuGCg------CGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 84152 0.77 0.398701
Target:  5'- cGGGAAGugGUCGcAGcGCGCGCGCCgGa -3'
miRNA:   3'- -UUCUUUugCAGC-UC-CGUGCGCGGgCg -5'
24719 3' -55.4 NC_005264.1 + 66170 0.76 0.433723
Target:  5'- uAGAAGAUGUgaUGAGcGCAC-CGCCCGCa -3'
miRNA:   3'- uUCUUUUGCA--GCUC-CGUGcGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 106241 0.75 0.461128
Target:  5'- ---cGAGCGgucgCGAGGCGCucGCGCCUGCu -3'
miRNA:   3'- uucuUUUGCa---GCUCCGUG--CGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 125501 0.75 0.461128
Target:  5'- cGGcGAACGUCGGGGUGCGCGgCCa- -3'
miRNA:   3'- uUCuUUUGCAGCUCCGUGCGCgGGcg -5'
24719 3' -55.4 NC_005264.1 + 6474 0.75 0.461128
Target:  5'- cGGcGAACGUCGGGGUGCGCGgCCa- -3'
miRNA:   3'- uUCuUUUGCAGCUCCGUGCGCgGGcg -5'
24719 3' -55.4 NC_005264.1 + 123700 0.74 0.528347
Target:  5'- aGGGAAuaccuGCGUCGGGGCGagugGCGCCgCGUc -3'
miRNA:   3'- -UUCUUu----UGCAGCUCCGUg---CGCGG-GCG- -5'
24719 3' -55.4 NC_005264.1 + 4673 0.74 0.528347
Target:  5'- aGGGAAuaccuGCGUCGGGGCGagugGCGCCgCGUc -3'
miRNA:   3'- -UUCUUu----UGCAGCUCCGUg---CGCGG-GCG- -5'
24719 3' -55.4 NC_005264.1 + 111729 0.74 0.558276
Target:  5'- ----cAGCGUCGAGGCGCGaGCagaCCGCa -3'
miRNA:   3'- uucuuUUGCAGCUCCGUGCgCG---GGCG- -5'
24719 3' -55.4 NC_005264.1 + 6134 0.73 0.568362
Target:  5'- cGGGAGGGCGa--GGGcCGCGCGCCCGUc -3'
miRNA:   3'- -UUCUUUUGCagcUCC-GUGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 15235 0.73 0.568362
Target:  5'- gAGGAcacAGugGUCGuucuGCAUGCGCCUGCg -3'
miRNA:   3'- -UUCU---UUugCAGCuc--CGUGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 125161 0.73 0.568362
Target:  5'- cGGGAGGGCGa--GGGcCGCGCGCCCGUc -3'
miRNA:   3'- -UUCUUUUGCagcUCC-GUGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 96337 0.73 0.588664
Target:  5'- -cGAGcuCGUCGAGcGCgccGCGCaGCCCGCc -3'
miRNA:   3'- uuCUUuuGCAGCUC-CG---UGCG-CGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 114979 0.73 0.588664
Target:  5'- -cGcGAAC-UUGAGGCGCGUGCCgGCg -3'
miRNA:   3'- uuCuUUUGcAGCUCCGUGCGCGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.