miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24719 3' -55.4 NC_005264.1 + 55566 0.71 0.710988
Target:  5'- gGGGGGAGCG-CGGcccacugcagcGGaCAUGCGCCCGUg -3'
miRNA:   3'- -UUCUUUUGCaGCU-----------CC-GUGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 47939 0.7 0.730844
Target:  5'- cGGAGGACGgCGAgacccGGUccaGCGUGCCCGUg -3'
miRNA:   3'- uUCUUUUGCaGCU-----CCG---UGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 95036 0.7 0.730844
Target:  5'- cAAGAAGAcCGUCGAGGCccACGCGUacUUGUu -3'
miRNA:   3'- -UUCUUUU-GCAGCUCCG--UGCGCG--GGCG- -5'
24719 3' -55.4 NC_005264.1 + 130545 0.7 0.730844
Target:  5'- --cGAAGCGUCGcGGCGCGUGUgcuaCGCg -3'
miRNA:   3'- uucUUUUGCAGCuCCGUGCGCGg---GCG- -5'
24719 3' -55.4 NC_005264.1 + 62715 0.7 0.730844
Target:  5'- uGAGAucuuGGCGUCGGGGUAguaGUCCGCg -3'
miRNA:   3'- -UUCUu---UUGCAGCUCCGUgcgCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 53202 0.7 0.740648
Target:  5'- uGGggGACGUggcCGAGGUaguggACGCGUaucuCCGCg -3'
miRNA:   3'- uUCuuUUGCA---GCUCCG-----UGCGCG----GGCG- -5'
24719 3' -55.4 NC_005264.1 + 48040 0.7 0.740648
Target:  5'- cAGAAGcUGUCGAGGCAUuucCCCGCg -3'
miRNA:   3'- uUCUUUuGCAGCUCCGUGcgcGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 150488 0.7 0.74939
Target:  5'- -cGAGAGCGUCGccgauGGGCGuggauggUGCGCCCa- -3'
miRNA:   3'- uuCUUUUGCAGC-----UCCGU-------GCGCGGGcg -5'
24719 3' -55.4 NC_005264.1 + 31461 0.7 0.74939
Target:  5'- -cGAGAGCGUCGccgauGGGCGuggauggUGCGCCCa- -3'
miRNA:   3'- uuCUUUUGCAGC-----UCCGU-------GCGCGGGcg -5'
24719 3' -55.4 NC_005264.1 + 118349 0.7 0.750356
Target:  5'- cGAGAAaaauugggucucGACGUCGAuGGuCACGaaCGCCUGCc -3'
miRNA:   3'- -UUCUU------------UUGCAGCU-CC-GUGC--GCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 144084 0.7 0.750356
Target:  5'- cGGAAGAUGUCGGaGCGCGC-CUCGUc -3'
miRNA:   3'- uUCUUUUGCAGCUcCGUGCGcGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 76229 0.7 0.759961
Target:  5'- gAAGAAAGgcuguCG-CGAGGCGCGaCGaCCGCg -3'
miRNA:   3'- -UUCUUUU-----GCaGCUCCGUGC-GCgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 121318 0.7 0.769452
Target:  5'- -cGAGAACGU-GGGGC-UGCuCCCGCa -3'
miRNA:   3'- uuCUUUUGCAgCUCCGuGCGcGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 122979 0.7 0.778819
Target:  5'- uAGAgGAACGUCcuGGC-CGCGCCgGCc -3'
miRNA:   3'- uUCU-UUUGCAGcuCCGuGCGCGGgCG- -5'
24719 3' -55.4 NC_005264.1 + 3953 0.7 0.778819
Target:  5'- uAGAgGAACGUCcuGGC-CGCGCCgGCc -3'
miRNA:   3'- uUCU-UUUGCAGcuCCGuGCGCGGgCG- -5'
24719 3' -55.4 NC_005264.1 + 63283 0.7 0.778819
Target:  5'- aGAGAGGACaaccggccccaGUCGGGGgAUGCGgacuCCCGCc -3'
miRNA:   3'- -UUCUUUUG-----------CAGCUCCgUGCGC----GGGCG- -5'
24719 3' -55.4 NC_005264.1 + 47396 0.69 0.788055
Target:  5'- cGAGAGuggcGCGUgGuuGGGUGCGcCGCCCGUa -3'
miRNA:   3'- -UUCUUu---UGCAgC--UCCGUGC-GCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 152578 0.69 0.79715
Target:  5'- gAAGAAucuaaguGCGaaccucuagUGAaGCACGCGCCCGCu -3'
miRNA:   3'- -UUCUUu------UGCa--------GCUcCGUGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 4483 0.69 0.79715
Target:  5'- cGGAAAcCGUCaaGGGGCGCgguGCGgCCGCu -3'
miRNA:   3'- uUCUUUuGCAG--CUCCGUG---CGCgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 70460 0.69 0.814883
Target:  5'- -uGAu-GCGgaaCGGGGCAgaGCGUCCGCa -3'
miRNA:   3'- uuCUuuUGCa--GCUCCGUg-CGCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.