miRNA display CGI


Results 81 - 100 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24719 3' -55.4 NC_005264.1 + 94500 0.68 0.871298
Target:  5'- -cGucAACGUCuGGGCACGaGUCCGUa -3'
miRNA:   3'- uuCuuUUGCAGcUCCGUGCgCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 81275 0.68 0.871298
Target:  5'- cAAGGuuACGcUCaccaAGGUGCuGCGCCCGCu -3'
miRNA:   3'- -UUCUuuUGC-AGc---UCCGUG-CGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 131601 0.68 0.871298
Target:  5'- gGAGGGAGCGgcgCGcguGGGCGCGCGCg--- -3'
miRNA:   3'- -UUCUUUUGCa--GC---UCCGUGCGCGggcg -5'
24719 3' -55.4 NC_005264.1 + 38397 0.68 0.871298
Target:  5'- aAAGAcaAGAUcUCGAGGCcgcggagcACGCGCuCUGCg -3'
miRNA:   3'- -UUCU--UUUGcAGCUCCG--------UGCGCG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 125094 0.67 0.878546
Target:  5'- -cGAAcucGCGUCGAcgguGGCGgGUGCCUGUu -3'
miRNA:   3'- uuCUUu--UGCAGCU----CCGUgCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 61370 0.67 0.878546
Target:  5'- --cAAAGCGUCGGGGU-CGCGgucucCCCGUu -3'
miRNA:   3'- uucUUUUGCAGCUCCGuGCGC-----GGGCG- -5'
24719 3' -55.4 NC_005264.1 + 126285 0.67 0.883488
Target:  5'- -cGGAGGCGgccaugccgcuuUCGGGcGCGCggccgauggcuccuGCGCCCGCc -3'
miRNA:   3'- uuCUUUUGC------------AGCUC-CGUG--------------CGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 99542 0.67 0.885573
Target:  5'- gGGGAGAGCGaCGAGG-ACGCGUuuucUUGCg -3'
miRNA:   3'- -UUCUUUUGCaGCUCCgUGCGCG----GGCG- -5'
24719 3' -55.4 NC_005264.1 + 110547 0.67 0.885573
Target:  5'- -uGAuuACgGUgGAGGuCGCGCGUaCCGCa -3'
miRNA:   3'- uuCUuuUG-CAgCUCC-GUGCGCG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 67881 0.67 0.885573
Target:  5'- gAGGGAAugGgccgCGAGGCccaccaccgACGCGUagauaacggCCGCa -3'
miRNA:   3'- -UUCUUUugCa---GCUCCG---------UGCGCG---------GGCG- -5'
24719 3' -55.4 NC_005264.1 + 52927 0.67 0.892375
Target:  5'- cGAGggG-CaUUGcauGGC-CGCGCCCGCg -3'
miRNA:   3'- -UUCuuUuGcAGCu--CCGuGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 162737 0.67 0.892375
Target:  5'- aAAGGAAAC-UCGAgcGGCcCGCGUgCGCc -3'
miRNA:   3'- -UUCUUUUGcAGCU--CCGuGCGCGgGCG- -5'
24719 3' -55.4 NC_005264.1 + 159117 0.67 0.892375
Target:  5'- --cGAGACGUCgGAGaaGCcCGCCCGCg -3'
miRNA:   3'- uucUUUUGCAG-CUCcgUGcGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 53563 0.67 0.892375
Target:  5'- -uGGAAGC-UCGcGGUacgACGCGCCCGa -3'
miRNA:   3'- uuCUUUUGcAGCuCCG---UGCGCGGGCg -5'
24719 3' -55.4 NC_005264.1 + 43711 0.67 0.892375
Target:  5'- aAAGGAAAC-UCGAgcGGCcCGCGUgCGCc -3'
miRNA:   3'- -UUCUUUUGcAGCU--CCGuGCGCGgGCG- -5'
24719 3' -55.4 NC_005264.1 + 60840 0.67 0.898948
Target:  5'- cAGcuuGGCGUCGGcgucGGCGCGUGCgCgGCa -3'
miRNA:   3'- uUCuu-UUGCAGCU----CCGUGCGCG-GgCG- -5'
24719 3' -55.4 NC_005264.1 + 47086 0.67 0.898948
Target:  5'- cGAGAAGugGcacggCGAGaGUAUaGCGCUCGCc -3'
miRNA:   3'- -UUCUUUugCa----GCUC-CGUG-CGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 87139 0.67 0.898948
Target:  5'- -cGAGAuCGUCGcGGUACugaacagcauGCGCgCCGCg -3'
miRNA:   3'- uuCUUUuGCAGCuCCGUG----------CGCG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 19414 0.67 0.898948
Target:  5'- uGGggGAgG-CGAGGCGCcggguGUGgCCGCg -3'
miRNA:   3'- uUCuuUUgCaGCUCCGUG-----CGCgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 38918 0.67 0.898948
Target:  5'- cAGcGAACGUCGAGGUucacaaACGUGCU-GCu -3'
miRNA:   3'- uUCuUUUGCAGCUCCG------UGCGCGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.