miRNA display CGI


Results 21 - 40 of 145 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24719 3' -55.4 NC_005264.1 + 149877 0.66 0.92289
Target:  5'- ------uCGUCGGcggcGGCGCGCcGCCCGg -3'
miRNA:   3'- uucuuuuGCAGCU----CCGUGCG-CGGGCg -5'
24719 3' -55.4 NC_005264.1 + 112995 0.66 0.92289
Target:  5'- cAGAAGGCuG-CGGcGUACGUGCUCGCg -3'
miRNA:   3'- uUCUUUUG-CaGCUcCGUGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 86466 0.66 0.92289
Target:  5'- -cGAAcACGUgGuuagcGGGUaccaACGCGCCUGCg -3'
miRNA:   3'- uuCUUuUGCAgC-----UCCG----UGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 83324 0.66 0.92289
Target:  5'- -cGAAu-UGUCGuuaGUugGUGCCCGCa -3'
miRNA:   3'- uuCUUuuGCAGCuc-CGugCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 30851 0.66 0.92289
Target:  5'- ------uCGUCGGcggcGGCGCGCcGCCCGg -3'
miRNA:   3'- uucuuuuGCAGCU----CCGUGCG-CGGGCg -5'
24719 3' -55.4 NC_005264.1 + 127158 0.66 0.917262
Target:  5'- uGAGGAGACGcCGAGGU-CGgGUCUGa -3'
miRNA:   3'- -UUCUUUUGCaGCUCCGuGCgCGGGCg -5'
24719 3' -55.4 NC_005264.1 + 8131 0.66 0.917262
Target:  5'- uGAGGAGACGcCGAGGU-CGgGUCUGa -3'
miRNA:   3'- -UUCUUUUGCaGCUCCGuGCgCGGGCg -5'
24719 3' -55.4 NC_005264.1 + 35784 0.66 0.917262
Target:  5'- cGGAGGGCGcgguggcgccgUCGuGGCGgGCGCCUcuGCc -3'
miRNA:   3'- uUCUUUUGC-----------AGCuCCGUgCGCGGG--CG- -5'
24719 3' -55.4 NC_005264.1 + 34298 0.66 0.917262
Target:  5'- -cGAGGGCcccUCGAgGGCGcCGCGCCUGa -3'
miRNA:   3'- uuCUUUUGc--AGCU-CCGU-GCGCGGGCg -5'
24719 3' -55.4 NC_005264.1 + 153325 0.66 0.917262
Target:  5'- -cGAGGGCcccUCGAgGGCGcCGCGCCUGa -3'
miRNA:   3'- uuCUUUUGc--AGCU-CCGU-GCGCGGGCg -5'
24719 3' -55.4 NC_005264.1 + 154810 0.66 0.917262
Target:  5'- cGGAGGGCGcgguggcgccgUCGuGGCGgGCGCCUcuGCc -3'
miRNA:   3'- uUCUUUUGC-----------AGCuCCGUgCGCGGG--CG- -5'
24719 3' -55.4 NC_005264.1 + 150694 0.66 0.915526
Target:  5'- -cGAAcGCG-CGAGGCAgGgcucucggcggggcUGCCCGCc -3'
miRNA:   3'- uuCUUuUGCaGCUCCGUgC--------------GCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 21245 0.66 0.911394
Target:  5'- -uGAcGACGgcUCGAGuGUGCGCG-CCGCg -3'
miRNA:   3'- uuCUuUUGC--AGCUC-CGUGCGCgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 144422 0.66 0.911394
Target:  5'- ---cGAGCGa-GAGG-GCGCGCCUGCg -3'
miRNA:   3'- uucuUUUGCagCUCCgUGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 17137 0.66 0.911394
Target:  5'- cGGuacGGCGUCGAGGgGCGCGgCUa- -3'
miRNA:   3'- uUCuu-UUGCAGCUCCgUGCGCgGGcg -5'
24719 3' -55.4 NC_005264.1 + 139491 0.66 0.911394
Target:  5'- gGAGAGAAuCGccUCGGGGCAgacccCGCuGgCCGCg -3'
miRNA:   3'- -UUCUUUU-GC--AGCUCCGU-----GCG-CgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 148182 0.66 0.911394
Target:  5'- gGAGGGAGCGggUGAGGuuaUugGCGgCCGUc -3'
miRNA:   3'- -UUCUUUUGCa-GCUCC---GugCGCgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 23040 0.66 0.911394
Target:  5'- ----cGACGgcCGAcGGCACGCGUUCGUg -3'
miRNA:   3'- uucuuUUGCa-GCU-CCGUGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 5026 0.66 0.910794
Target:  5'- aGAGGAGgccacgagguuccGCGUCGuGGGCGC-CGCCUaGCu -3'
miRNA:   3'- -UUCUUU-------------UGCAGC-UCCGUGcGCGGG-CG- -5'
24719 3' -55.4 NC_005264.1 + 88093 0.67 0.905289
Target:  5'- cAGugcGCGUCG-GGCACaGCGUCgGCc -3'
miRNA:   3'- uUCuuuUGCAGCuCCGUG-CGCGGgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.