miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24719 3' -55.4 NC_005264.1 + 3418 0.77 0.373654
Target:  5'- gGGGGAggGACGUa-GGGC-CGCGCCCGCg -3'
miRNA:   3'- -UUCUU--UUGCAgcUCCGuGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 3953 0.7 0.778819
Target:  5'- uAGAgGAACGUCcuGGC-CGCGCCgGCc -3'
miRNA:   3'- uUCU-UUUGCAGcuCCGuGCGCGGgCG- -5'
24719 3' -55.4 NC_005264.1 + 4483 0.69 0.79715
Target:  5'- cGGAAAcCGUCaaGGGGCGCgguGCGgCCGCu -3'
miRNA:   3'- uUCUUUuGCAG--CUCCGUG---CGCgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 4673 0.74 0.528347
Target:  5'- aGGGAAuaccuGCGUCGGGGCGagugGCGCCgCGUc -3'
miRNA:   3'- -UUCUUu----UGCAGCUCCGUg---CGCGG-GCG- -5'
24719 3' -55.4 NC_005264.1 + 5026 0.66 0.910794
Target:  5'- aGAGGAGgccacgagguuccGCGUCGuGGGCGC-CGCCUaGCu -3'
miRNA:   3'- -UUCUUU-------------UGCAGC-UCCGUGcGCGGG-CG- -5'
24719 3' -55.4 NC_005264.1 + 6134 0.73 0.568362
Target:  5'- cGGGAGGGCGa--GGGcCGCGCGCCCGUc -3'
miRNA:   3'- -UUCUUUUGCagcUCC-GUGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 6474 0.75 0.461128
Target:  5'- cGGcGAACGUCGGGGUGCGCGgCCa- -3'
miRNA:   3'- uUCuUUUGCAGCUCCGUGCGCgGGcg -5'
24719 3' -55.4 NC_005264.1 + 8131 0.66 0.917262
Target:  5'- uGAGGAGACGcCGAGGU-CGgGUCUGa -3'
miRNA:   3'- -UUCUUUUGCaGCUCCGuGCgCGGGCg -5'
24719 3' -55.4 NC_005264.1 + 9502 0.68 0.856162
Target:  5'- cAGccAGCGUC-AGGCGCGgCGCCCu- -3'
miRNA:   3'- uUCuuUUGCAGcUCCGUGC-GCGGGcg -5'
24719 3' -55.4 NC_005264.1 + 12193 0.71 0.680722
Target:  5'- cGAGgcAugGUCGcaGGGCgAUGCGCgCCGCc -3'
miRNA:   3'- -UUCuuUugCAGC--UCCG-UGCGCG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 13265 0.72 0.670541
Target:  5'- cGGAGGACGaCGAGGguuCGCGCCaGCg -3'
miRNA:   3'- uUCUUUUGCaGCUCCgu-GCGCGGgCG- -5'
24719 3' -55.4 NC_005264.1 + 13349 0.77 0.381883
Target:  5'- cGAGGauGAACGUCGGGGC-CGagccgggGCCCGCg -3'
miRNA:   3'- -UUCU--UUUGCAGCUCCGuGCg------CGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 15235 0.73 0.568362
Target:  5'- gAGGAcacAGugGUCGuucuGCAUGCGCCUGCg -3'
miRNA:   3'- -UUCU---UUugCAGCuc--CGUGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 15861 0.67 0.905289
Target:  5'- aAAGAuucuCGagGAGGCucCGCaGCCUGCg -3'
miRNA:   3'- -UUCUuuu-GCagCUCCGu-GCG-CGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 16188 0.68 0.863835
Target:  5'- gGAGGuagcuuGCGUcuaccggacaaCGGGGgACGCGCCgCGCu -3'
miRNA:   3'- -UUCUuu----UGCA-----------GCUCCgUGCGCGG-GCG- -5'
24719 3' -55.4 NC_005264.1 + 17137 0.66 0.911394
Target:  5'- cGGuacGGCGUCGAGGgGCGCGgCUa- -3'
miRNA:   3'- uUCuu-UUGCAGCUCCgUGCGCgGGcg -5'
24719 3' -55.4 NC_005264.1 + 18748 0.66 0.933427
Target:  5'- cGAGAAAGa--CGAGGCGCGC-UCCGa -3'
miRNA:   3'- -UUCUUUUgcaGCUCCGUGCGcGGGCg -5'
24719 3' -55.4 NC_005264.1 + 19414 0.67 0.898948
Target:  5'- uGGggGAgG-CGAGGCGCcggguGUGgCCGCg -3'
miRNA:   3'- uUCuuUUgCaGCUCCGUG-----CGCgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 20518 0.66 0.933427
Target:  5'- cGAG-AAGCca-GGGGCACgcguuGCGCCCGUu -3'
miRNA:   3'- -UUCuUUUGcagCUCCGUG-----CGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 21245 0.66 0.911394
Target:  5'- -uGAcGACGgcUCGAGuGUGCGCG-CCGCg -3'
miRNA:   3'- uuCUuUUGC--AGCUC-CGUGCGCgGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.