miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24719 3' -55.4 NC_005264.1 + 22667 0.66 0.936889
Target:  5'- uGGggGcgguCGUCGGGGUagaaaguuugcguuACGCgaagaaucGCCCGCu -3'
miRNA:   3'- uUCuuUu---GCAGCUCCG--------------UGCG--------CGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 23040 0.66 0.911394
Target:  5'- ----cGACGgcCGAcGGCACGCGUUCGUg -3'
miRNA:   3'- uucuuUUGCa-GCU-CCGUGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 24155 0.68 0.856162
Target:  5'- aAAGuauGGCGagUCGAGGCugcUGCGgCCGCg -3'
miRNA:   3'- -UUCuu-UUGC--AGCUCCGu--GCGCgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 24407 0.68 0.863077
Target:  5'- cAAGuAAGCG-CGcGGCGCGUuaaacacGCCCGCc -3'
miRNA:   3'- -UUCuUUUGCaGCuCCGUGCG-------CGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 25622 0.72 0.670541
Target:  5'- cGGAAcacGGCGgcggUGGGGC-CGCGCuCCGCg -3'
miRNA:   3'- uUCUU---UUGCa---GCUCCGuGCGCG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 26693 0.68 0.840212
Target:  5'- aAAGAAuuuuauuguuUGUCGGGGCGCauGCGCuccCCGCg -3'
miRNA:   3'- -UUCUUuu--------GCAGCUCCGUG--CGCG---GGCG- -5'
24719 3' -55.4 NC_005264.1 + 30851 0.66 0.92289
Target:  5'- ------uCGUCGGcggcGGCGCGCcGCCCGg -3'
miRNA:   3'- uucuuuuGCAGCU----CCGUGCG-CGGGCg -5'
24719 3' -55.4 NC_005264.1 + 31461 0.7 0.74939
Target:  5'- -cGAGAGCGUCGccgauGGGCGuggauggUGCGCCCa- -3'
miRNA:   3'- uuCUUUUGCAGC-----UCCGU-------GCGCGGGcg -5'
24719 3' -55.4 NC_005264.1 + 32873 0.66 0.928279
Target:  5'- gAGGuGAACcuUgGAGGCAgGCGCCCa- -3'
miRNA:   3'- -UUCuUUUGc-AgCUCCGUgCGCGGGcg -5'
24719 3' -55.4 NC_005264.1 + 34122 0.87 0.09604
Target:  5'- -cGAAAcaGCGUCGAGGCGCGaGCCCGCc -3'
miRNA:   3'- uuCUUU--UGCAGCUCCGUGCgCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 34298 0.66 0.917262
Target:  5'- -cGAGGGCcccUCGAgGGCGcCGCGCCUGa -3'
miRNA:   3'- uuCUUUUGc--AGCU-CCGU-GCGCGGGCg -5'
24719 3' -55.4 NC_005264.1 + 35784 0.66 0.917262
Target:  5'- cGGAGGGCGcgguggcgccgUCGuGGCGgGCGCCUcuGCc -3'
miRNA:   3'- uUCUUUUGC-----------AGCuCCGUgCGCGGG--CG- -5'
24719 3' -55.4 NC_005264.1 + 36282 0.66 0.928279
Target:  5'- uGGAccACGUCuucgcGGCGCGaagaGCCCGUa -3'
miRNA:   3'- uUCUuuUGCAGcu---CCGUGCg---CGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 38397 0.68 0.871298
Target:  5'- aAAGAcaAGAUcUCGAGGCcgcggagcACGCGCuCUGCg -3'
miRNA:   3'- -UUCU--UUUGcAGCUCCG--------UGCGCG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 38830 0.66 0.938336
Target:  5'- cGAGAAcGACGaCGAuGCGCGgGCaCCGUg -3'
miRNA:   3'- -UUCUU-UUGCaGCUcCGUGCgCG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 38918 0.67 0.898948
Target:  5'- cAGcGAACGUCGAGGUucacaaACGUGCU-GCu -3'
miRNA:   3'- uUCuUUUGCAGCUCCG------UGCGCGGgCG- -5'
24719 3' -55.4 NC_005264.1 + 39815 0.68 0.840212
Target:  5'- uGGugGGCGagGAGGCAUGUG-CCGCc -3'
miRNA:   3'- uUCuuUUGCagCUCCGUGCGCgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 43611 0.72 0.629589
Target:  5'- gGGGGcuACGauuUCGAGGCucggaaGCGCGCCgGCg -3'
miRNA:   3'- -UUCUuuUGC---AGCUCCG------UGCGCGGgCG- -5'
24719 3' -55.4 NC_005264.1 + 43711 0.67 0.892375
Target:  5'- aAAGGAAAC-UCGAgcGGCcCGCGUgCGCc -3'
miRNA:   3'- -UUCUUUUGcAGCU--CCGuGCGCGgGCG- -5'
24719 3' -55.4 NC_005264.1 + 45387 0.68 0.835277
Target:  5'- gGAGAAGGCG-CGGcaaacgauggagggcGGCGCccuGCGCgCCGCg -3'
miRNA:   3'- -UUCUUUUGCaGCU---------------CCGUG---CGCG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.