miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24719 3' -55.4 NC_005264.1 + 47086 0.67 0.898948
Target:  5'- cGAGAAGugGcacggCGAGaGUAUaGCGCUCGCc -3'
miRNA:   3'- -UUCUUUugCa----GCUC-CGUG-CGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 47396 0.69 0.788055
Target:  5'- cGAGAGuggcGCGUgGuuGGGUGCGcCGCCCGUa -3'
miRNA:   3'- -UUCUUu---UGCAgC--UCCGUGC-GCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 47939 0.7 0.730844
Target:  5'- cGGAGGACGgCGAgacccGGUccaGCGUGCCCGUg -3'
miRNA:   3'- uUCUUUUGCaGCU-----CCG---UGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 48040 0.7 0.740648
Target:  5'- cAGAAGcUGUCGAGGCAUuucCCCGCg -3'
miRNA:   3'- uUCUUUuGCAGCUCCGUGcgcGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 48382 0.66 0.938336
Target:  5'- -----cGCGUCGAGGCGCucgaCGUUCGUc -3'
miRNA:   3'- uucuuuUGCAGCUCCGUGc---GCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 49786 0.68 0.835277
Target:  5'- gAGGAGGgcacggacuaccuccGCGUCGAGGUGCaGgGCCgCGUa -3'
miRNA:   3'- -UUCUUU---------------UGCAGCUCCGUG-CgCGG-GCG- -5'
24719 3' -55.4 NC_005264.1 + 50545 0.71 0.700954
Target:  5'- cAAGAGGccUGUCGAagcuaGGCGCGCGCgUGCg -3'
miRNA:   3'- -UUCUUUu-GCAGCU-----CCGUGCGCGgGCG- -5'
24719 3' -55.4 NC_005264.1 + 52447 0.72 0.639844
Target:  5'- -uGAGcAGCGUCa--GCAUGCGCCCGCc -3'
miRNA:   3'- uuCUU-UUGCAGcucCGUGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 52927 0.67 0.892375
Target:  5'- cGAGggG-CaUUGcauGGC-CGCGCCCGCg -3'
miRNA:   3'- -UUCuuUuGcAGCu--CCGuGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 53202 0.7 0.740648
Target:  5'- uGGggGACGUggcCGAGGUaguggACGCGUaucuCCGCg -3'
miRNA:   3'- uUCuuUUGCA---GCUCCG-----UGCGCG----GGCG- -5'
24719 3' -55.4 NC_005264.1 + 53563 0.67 0.892375
Target:  5'- -uGGAAGC-UCGcGGUacgACGCGCCCGa -3'
miRNA:   3'- uuCUUUUGcAGCuCCG---UGCGCGGGCg -5'
24719 3' -55.4 NC_005264.1 + 54225 0.68 0.840212
Target:  5'- uAGAGGccugUGUCGAGGCG-GC-CCCGCg -3'
miRNA:   3'- uUCUUUu---GCAGCUCCGUgCGcGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 55566 0.71 0.710988
Target:  5'- gGGGGGAGCG-CGGcccacugcagcGGaCAUGCGCCCGUg -3'
miRNA:   3'- -UUCUUUUGCaGCU-----------CC-GUGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 58791 0.68 0.866845
Target:  5'- cAGAGGAUGUCGGcaaaccgauuuccgcGGCGCGCGUCa-- -3'
miRNA:   3'- uUCUUUUGCAGCU---------------CCGUGCGCGGgcg -5'
24719 3' -55.4 NC_005264.1 + 60840 0.67 0.898948
Target:  5'- cAGcuuGGCGUCGGcgucGGCGCGUGCgCgGCa -3'
miRNA:   3'- uUCuu-UUGCAGCU----CCGUGCGCG-GgCG- -5'
24719 3' -55.4 NC_005264.1 + 61370 0.67 0.878546
Target:  5'- --cAAAGCGUCGGGGU-CGCGgucucCCCGUu -3'
miRNA:   3'- uucUUUUGCAGCUCCGuGCGC-----GGGCG- -5'
24719 3' -55.4 NC_005264.1 + 62272 0.73 0.598866
Target:  5'- --cGAGACGaUCGcGGCACGCuucaacauGCCCGCg -3'
miRNA:   3'- uucUUUUGC-AGCuCCGUGCG--------CGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 62715 0.7 0.730844
Target:  5'- uGAGAucuuGGCGUCGGGGUAguaGUCCGCg -3'
miRNA:   3'- -UUCUu---UUGCAGCUCCGUgcgCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 63283 0.7 0.778819
Target:  5'- aGAGAGGACaaccggccccaGUCGGGGgAUGCGgacuCCCGCc -3'
miRNA:   3'- -UUCUUUUG-----------CAGCUCCgUGCGC----GGGCG- -5'
24719 3' -55.4 NC_005264.1 + 64853 0.68 0.848285
Target:  5'- cAGGAAcACGaagucCGGGGCugGgagauUGCCCGCa -3'
miRNA:   3'- -UUCUUuUGCa----GCUCCGugC-----GCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.