miRNA display CGI


Results 61 - 80 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24719 3' -55.4 NC_005264.1 + 66170 0.76 0.433723
Target:  5'- uAGAAGAUGUgaUGAGcGCAC-CGCCCGCa -3'
miRNA:   3'- uUCUUUUGCA--GCUC-CGUGcGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 67217 0.66 0.92289
Target:  5'- uGGGAAcCGUCG-GGCAUGUuccaagagaGCCCGa -3'
miRNA:   3'- uUCUUUuGCAGCuCCGUGCG---------CGGGCg -5'
24719 3' -55.4 NC_005264.1 + 67362 0.69 0.814883
Target:  5'- cGGAAAACGU--AGcGCcCGCGCUCGCu -3'
miRNA:   3'- uUCUUUUGCAgcUC-CGuGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 67881 0.67 0.885573
Target:  5'- gAGGGAAugGgccgCGAGGCccaccaccgACGCGUagauaacggCCGCa -3'
miRNA:   3'- -UUCUUUugCa---GCUCCG---------UGCGCG---------GGCG- -5'
24719 3' -55.4 NC_005264.1 + 70460 0.69 0.814883
Target:  5'- -uGAu-GCGgaaCGGGGCAgaGCGUCCGCa -3'
miRNA:   3'- uuCUuuUGCa--GCUCCGUg-CGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 72436 0.66 0.933427
Target:  5'- -cGAAcGCGUCGAacacguuguaucGGCGgGCG-CCGCc -3'
miRNA:   3'- uuCUUuUGCAGCU------------CCGUgCGCgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 73045 0.67 0.905289
Target:  5'- cGGAAAGCGcCGGcGGUAUGCGgCCa- -3'
miRNA:   3'- uUCUUUUGCaGCU-CCGUGCGCgGGcg -5'
24719 3' -55.4 NC_005264.1 + 76229 0.7 0.759961
Target:  5'- gAAGAAAGgcuguCG-CGAGGCGCGaCGaCCGCg -3'
miRNA:   3'- -UUCUUUU-----GCaGCUCCGUGC-GCgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 76642 0.66 0.92289
Target:  5'- aGAGAAGACcaUCGAGGCcgAUGCGgCCa- -3'
miRNA:   3'- -UUCUUUUGc-AGCUCCG--UGCGCgGGcg -5'
24719 3' -55.4 NC_005264.1 + 80113 0.66 0.928279
Target:  5'- -cGAGGAUGaCGGGGCAaGCGCagaGCa -3'
miRNA:   3'- uuCUUUUGCaGCUCCGUgCGCGgg-CG- -5'
24719 3' -55.4 NC_005264.1 + 80775 0.67 0.905289
Target:  5'- gAAGAucuUGUCcgcgcucuaGAGGagGCGCGCCUGCg -3'
miRNA:   3'- -UUCUuuuGCAG---------CUCCg-UGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 81275 0.68 0.871298
Target:  5'- cAAGGuuACGcUCaccaAGGUGCuGCGCCCGCu -3'
miRNA:   3'- -UUCUuuUGC-AGc---UCCGUG-CGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 83324 0.66 0.92289
Target:  5'- -cGAAu-UGUCGuuaGUugGUGCCCGCa -3'
miRNA:   3'- uuCUUuuGCAGCuc-CGugCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 84152 0.77 0.398701
Target:  5'- cGGGAAGugGUCGcAGcGCGCGCGCCgGa -3'
miRNA:   3'- -UUCUUUugCAGC-UC-CGUGCGCGGgCg -5'
24719 3' -55.4 NC_005264.1 + 86466 0.66 0.92289
Target:  5'- -cGAAcACGUgGuuagcGGGUaccaACGCGCCUGCg -3'
miRNA:   3'- uuCUUuUGCAgC-----UCCG----UGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 87139 0.67 0.898948
Target:  5'- -cGAGAuCGUCGcGGUACugaacagcauGCGCgCCGCg -3'
miRNA:   3'- uuCUUUuGCAGCuCCGUG----------CGCG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 88093 0.67 0.905289
Target:  5'- cAGugcGCGUCG-GGCACaGCGUCgGCc -3'
miRNA:   3'- uUCuuuUGCAGCuCCGUG-CGCGGgCG- -5'
24719 3' -55.4 NC_005264.1 + 89027 0.72 0.639844
Target:  5'- -----cAUGUCGGGGCACuCGCCUGUg -3'
miRNA:   3'- uucuuuUGCAGCUCCGUGcGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 93202 0.72 0.629589
Target:  5'- uAGAAAGCGUCGucauggacgauGGGCAguCGCGCCaCGa -3'
miRNA:   3'- uUCUUUUGCAGC-----------UCCGU--GCGCGG-GCg -5'
24719 3' -55.4 NC_005264.1 + 94500 0.68 0.871298
Target:  5'- -cGucAACGUCuGGGCACGaGUCCGUa -3'
miRNA:   3'- uuCuuUUGCAGcUCCGUGCgCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.