miRNA display CGI


Results 101 - 120 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24719 3' -55.4 NC_005264.1 + 121318 0.7 0.769452
Target:  5'- -cGAGAACGU-GGGGC-UGCuCCCGCa -3'
miRNA:   3'- uuCUUUUGCAgCUCCGuGCGcGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 122445 0.77 0.373654
Target:  5'- gGGGGAggGACGUa-GGGC-CGCGCCCGCg -3'
miRNA:   3'- -UUCUU--UUGCAgcUCCGuGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 122618 0.68 0.831949
Target:  5'- uAGAcuGCGUCGuGGaauaCAUGCagGCCCGCu -3'
miRNA:   3'- uUCUuuUGCAGCuCC----GUGCG--CGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 122979 0.7 0.778819
Target:  5'- uAGAgGAACGUCcuGGC-CGCGCCgGCc -3'
miRNA:   3'- uUCU-UUUGCAGcuCCGuGCGCGGgCG- -5'
24719 3' -55.4 NC_005264.1 + 123700 0.74 0.528347
Target:  5'- aGGGAAuaccuGCGUCGGGGCGagugGCGCCgCGUc -3'
miRNA:   3'- -UUCUUu----UGCAGCUCCGUg---CGCGG-GCG- -5'
24719 3' -55.4 NC_005264.1 + 123989 0.66 0.92289
Target:  5'- -----cGCGUcacCGAcucGGCACgGUGCCCGCg -3'
miRNA:   3'- uucuuuUGCA---GCU---CCGUG-CGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 125094 0.67 0.878546
Target:  5'- -cGAAcucGCGUCGAcgguGGCGgGUGCCUGUu -3'
miRNA:   3'- uuCUUu--UGCAGCU----CCGUgCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 125161 0.73 0.568362
Target:  5'- cGGGAGGGCGa--GGGcCGCGCGCCCGUc -3'
miRNA:   3'- -UUCUUUUGCagcUCC-GUGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 125501 0.75 0.461128
Target:  5'- cGGcGAACGUCGGGGUGCGCGgCCa- -3'
miRNA:   3'- uUCuUUUGCAGCUCCGUGCGCgGGcg -5'
24719 3' -55.4 NC_005264.1 + 126285 0.67 0.883488
Target:  5'- -cGGAGGCGgccaugccgcuuUCGGGcGCGCggccgauggcuccuGCGCCCGCc -3'
miRNA:   3'- uuCUUUUGC------------AGCUC-CGUG--------------CGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 126338 0.72 0.629589
Target:  5'- ------uCGUCGAGGcCGCGCGCUuCGCa -3'
miRNA:   3'- uucuuuuGCAGCUCC-GUGCGCGG-GCG- -5'
24719 3' -55.4 NC_005264.1 + 127158 0.66 0.917262
Target:  5'- uGAGGAGACGcCGAGGU-CGgGUCUGa -3'
miRNA:   3'- -UUCUUUUGCaGCUCCGuGCgCGGGCg -5'
24719 3' -55.4 NC_005264.1 + 127546 0.71 0.684784
Target:  5'- -uGAuAGCGUCGugaacagucaggaccAcGGC-CGCGCCCGCg -3'
miRNA:   3'- uuCUuUUGCAGC---------------U-CCGuGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 128529 0.68 0.856162
Target:  5'- cAGccAGCGUC-AGGCGCGgCGCCCu- -3'
miRNA:   3'- uUCuuUUGCAGcUCCGUGC-GCGGGcg -5'
24719 3' -55.4 NC_005264.1 + 130545 0.7 0.730844
Target:  5'- --cGAAGCGUCGcGGCGCGUGUgcuaCGCg -3'
miRNA:   3'- uucUUUUGCAGCuCCGUGCGCGg---GCG- -5'
24719 3' -55.4 NC_005264.1 + 131220 0.71 0.680722
Target:  5'- cGAGgcAugGUCGcaGGGCgAUGCGCgCCGCc -3'
miRNA:   3'- -UUCuuUugCAGC--UCCG-UGCGCG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 131601 0.68 0.871298
Target:  5'- gGAGGGAGCGgcgCGcguGGGCGCGCGCg--- -3'
miRNA:   3'- -UUCUUUUGCa--GC---UCCGUGCGCGggcg -5'
24719 3' -55.4 NC_005264.1 + 131673 0.66 0.938336
Target:  5'- cAGAc--CGUUGGcGGCACGUcgGCUCGCa -3'
miRNA:   3'- uUCUuuuGCAGCU-CCGUGCG--CGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 132292 0.72 0.670541
Target:  5'- cGGAGGACGaCGAGGguuCGCGCCaGCg -3'
miRNA:   3'- uUCUUUUGCaGCUCCgu-GCGCGGgCG- -5'
24719 3' -55.4 NC_005264.1 + 132376 0.77 0.381883
Target:  5'- cGAGGauGAACGUCGGGGC-CGagccgggGCCCGCg -3'
miRNA:   3'- -UUCU--UUUGCAGCUCCGuGCg------CGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.