miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24719 3' -55.4 NC_005264.1 + 162737 0.67 0.892375
Target:  5'- aAAGGAAAC-UCGAgcGGCcCGCGUgCGCc -3'
miRNA:   3'- -UUCUUUUGcAGCU--CCGuGCGCGgGCG- -5'
24719 3' -55.4 NC_005264.1 + 162638 0.72 0.629589
Target:  5'- gGGGGcuACGauuUCGAGGCucggaaGCGCGCCgGCg -3'
miRNA:   3'- -UUCUuuUGC---AGCUCCG------UGCGCGGgCG- -5'
24719 3' -55.4 NC_005264.1 + 159117 0.67 0.892375
Target:  5'- --cGAGACGUCgGAGaaGCcCGCCCGCg -3'
miRNA:   3'- uucUUUUGCAG-CUCcgUGcGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 158841 0.68 0.840212
Target:  5'- uGGugGGCGagGAGGCAUGUG-CCGCc -3'
miRNA:   3'- uUCuuUUGCagCUCCGUGCGCgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 157856 0.66 0.938336
Target:  5'- cGAGAAcGACGaCGAuGCGCGgGCaCCGUg -3'
miRNA:   3'- -UUCUU-UUGCaGCUcCGUGCgCG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 154951 0.68 0.831949
Target:  5'- uGGggGACGUCGua-CGCGCGCagaUGCg -3'
miRNA:   3'- uUCuuUUGCAGCuccGUGCGCGg--GCG- -5'
24719 3' -55.4 NC_005264.1 + 154810 0.66 0.917262
Target:  5'- cGGAGGGCGcgguggcgccgUCGuGGCGgGCGCCUcuGCc -3'
miRNA:   3'- uUCUUUUGC-----------AGCuCCGUgCGCGGG--CG- -5'
24719 3' -55.4 NC_005264.1 + 154114 0.66 0.928279
Target:  5'- cGGggGGCGagcCGAaacggcGGcCACGCGCgCGCa -3'
miRNA:   3'- uUCuuUUGCa--GCU------CC-GUGCGCGgGCG- -5'
24719 3' -55.4 NC_005264.1 + 153325 0.66 0.917262
Target:  5'- -cGAGGGCcccUCGAgGGCGcCGCGCCUGa -3'
miRNA:   3'- uuCUUUUGc--AGCU-CCGU-GCGCGGGCg -5'
24719 3' -55.4 NC_005264.1 + 153149 0.87 0.09604
Target:  5'- -cGAAAcaGCGUCGAGGCGCGaGCCCGCc -3'
miRNA:   3'- uuCUUU--UGCAGCUCCGUGCgCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 152578 0.69 0.79715
Target:  5'- gAAGAAucuaaguGCGaaccucuagUGAaGCACGCGCCCGCu -3'
miRNA:   3'- -UUCUUu------UGCa--------GCUcCGUGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 151252 0.71 0.699948
Target:  5'- cAGAAGACG-CGGGGUacgacauACGCGCaCCGg -3'
miRNA:   3'- uUCUUUUGCaGCUCCG-------UGCGCG-GGCg -5'
24719 3' -55.4 NC_005264.1 + 150694 0.66 0.915526
Target:  5'- -cGAAcGCG-CGAGGCAgGgcucucggcggggcUGCCCGCc -3'
miRNA:   3'- uuCUUuUGCaGCUCCGUgC--------------GCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 150488 0.7 0.74939
Target:  5'- -cGAGAGCGUCGccgauGGGCGuggauggUGCGCCCa- -3'
miRNA:   3'- uuCUUUUGCAGC-----UCCGU-------GCGCGGGcg -5'
24719 3' -55.4 NC_005264.1 + 149877 0.66 0.92289
Target:  5'- ------uCGUCGGcggcGGCGCGCcGCCCGg -3'
miRNA:   3'- uucuuuuGCAGCU----CCGUGCG-CGGGCg -5'
24719 3' -55.4 NC_005264.1 + 148867 0.72 0.669521
Target:  5'- gAGGAGAGCGUaCGcaucuuuGGCGCGCGCUuaucucuCGCg -3'
miRNA:   3'- -UUCUUUUGCA-GCu------CCGUGCGCGG-------GCG- -5'
24719 3' -55.4 NC_005264.1 + 148182 0.66 0.911394
Target:  5'- gGAGGGAGCGggUGAGGuuaUugGCGgCCGUc -3'
miRNA:   3'- -UUCUUUUGCa-GCUCC---GugCGCgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 144422 0.66 0.911394
Target:  5'- ---cGAGCGa-GAGG-GCGCGCCUGCg -3'
miRNA:   3'- uucuUUUGCagCUCCgUGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 144084 0.7 0.750356
Target:  5'- cGGAAGAUGUCGGaGCGCGC-CUCGUc -3'
miRNA:   3'- uUCUUUUGCAGCUcCGUGCGcGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 142695 0.68 0.839394
Target:  5'- ---uGGGCGcCGGcGGCGCGCcacgccuGCCCGCa -3'
miRNA:   3'- uucuUUUGCaGCU-CCGUGCG-------CGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.