miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24719 3' -55.4 NC_005264.1 + 123700 0.74 0.528347
Target:  5'- aGGGAAuaccuGCGUCGGGGCGagugGCGCCgCGUc -3'
miRNA:   3'- -UUCUUu----UGCAGCUCCGUg---CGCGG-GCG- -5'
24719 3' -55.4 NC_005264.1 + 122979 0.7 0.778819
Target:  5'- uAGAgGAACGUCcuGGC-CGCGCCgGCc -3'
miRNA:   3'- uUCU-UUUGCAGcuCCGuGCGCGGgCG- -5'
24719 3' -55.4 NC_005264.1 + 122618 0.68 0.831949
Target:  5'- uAGAcuGCGUCGuGGaauaCAUGCagGCCCGCu -3'
miRNA:   3'- uUCUuuUGCAGCuCC----GUGCG--CGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 122445 0.77 0.373654
Target:  5'- gGGGGAggGACGUa-GGGC-CGCGCCCGCg -3'
miRNA:   3'- -UUCUU--UUGCAgcUCCGuGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 121318 0.7 0.769452
Target:  5'- -cGAGAACGU-GGGGC-UGCuCCCGCa -3'
miRNA:   3'- uuCUUUUGCAgCUCCGuGCGcGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 118927 0.72 0.650094
Target:  5'- ----cGACGUCGAGGCgACG-GCCgCGCu -3'
miRNA:   3'- uucuuUUGCAGCUCCG-UGCgCGG-GCG- -5'
24719 3' -55.4 NC_005264.1 + 118349 0.7 0.750356
Target:  5'- cGAGAAaaauugggucucGACGUCGAuGGuCACGaaCGCCUGCc -3'
miRNA:   3'- -UUCUU------------UUGCAGCU-CC-GUGC--GCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 117423 0.66 0.92289
Target:  5'- -cGggGcUGUCGcGGCGCGCaggGCgCCGCc -3'
miRNA:   3'- uuCuuUuGCAGCuCCGUGCG---CG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 114979 0.73 0.588664
Target:  5'- -cGcGAAC-UUGAGGCGCGUGCCgGCg -3'
miRNA:   3'- uuCuUUUGcAGCUCCGUGCGCGGgCG- -5'
24719 3' -55.4 NC_005264.1 + 114043 0.71 0.690863
Target:  5'- uGGGAAACG-CGAGGUcguuCGC-CCCGCc -3'
miRNA:   3'- uUCUUUUGCaGCUCCGu---GCGcGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 113685 0.68 0.85146
Target:  5'- -cGuGAugGUCGGGGUGCaaggcuugggcagagGCGCCuCGCa -3'
miRNA:   3'- uuCuUUugCAGCUCCGUG---------------CGCGG-GCG- -5'
24719 3' -55.4 NC_005264.1 + 112995 0.66 0.92289
Target:  5'- cAGAAGGCuG-CGGcGUACGUGCUCGCg -3'
miRNA:   3'- uUCUUUUG-CaGCUcCGUGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 111729 0.74 0.558276
Target:  5'- ----cAGCGUCGAGGCGCGaGCagaCCGCa -3'
miRNA:   3'- uucuuUUGCAGCUCCGUGCgCG---GGCG- -5'
24719 3' -55.4 NC_005264.1 + 110547 0.67 0.885573
Target:  5'- -uGAuuACgGUgGAGGuCGCGCGUaCCGCa -3'
miRNA:   3'- uuCUuuUG-CAgCUCC-GUGCGCG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 109271 0.68 0.863835
Target:  5'- -----cGCGUCG-GGCGCGuCGUaCCGCg -3'
miRNA:   3'- uucuuuUGCAGCuCCGUGC-GCG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 106241 0.75 0.461128
Target:  5'- ---cGAGCGgucgCGAGGCGCucGCGCCUGCu -3'
miRNA:   3'- uucuUUUGCa---GCUCCGUG--CGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 104369 0.72 0.660329
Target:  5'- -cGuuAAUGUCGcgcggcagauAGGCugGCGCCCGa -3'
miRNA:   3'- uuCuuUUGCAGC----------UCCGugCGCGGGCg -5'
24719 3' -55.4 NC_005264.1 + 101353 0.67 0.905289
Target:  5'- -cGAGAcCG-CGGGGCGCGUcgGCgCGCu -3'
miRNA:   3'- uuCUUUuGCaGCUCCGUGCG--CGgGCG- -5'
24719 3' -55.4 NC_005264.1 + 99542 0.67 0.885573
Target:  5'- gGGGAGAGCGaCGAGG-ACGCGUuuucUUGCg -3'
miRNA:   3'- -UUCUUUUGCaGCUCCgUGCGCG----GGCG- -5'
24719 3' -55.4 NC_005264.1 + 98415 0.67 0.905289
Target:  5'- cGGcAGACGUCaucGC-CGUGCCCGCg -3'
miRNA:   3'- uUCuUUUGCAGcucCGuGCGCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.