Results 61 - 80 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24719 | 3' | -55.4 | NC_005264.1 | + | 98103 | 0.66 | 0.928279 |
Target: 5'- -cGAuccuuGCG-CGGGGCACGgCGCCgaGCc -3' miRNA: 3'- uuCUuu---UGCaGCUCCGUGC-GCGGg-CG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 96337 | 0.73 | 0.588664 |
Target: 5'- -cGAGcuCGUCGAGcGCgccGCGCaGCCCGCc -3' miRNA: 3'- uuCUUuuGCAGCUC-CG---UGCG-CGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 95198 | 0.72 | 0.629589 |
Target: 5'- -cGAAGACGggccgCGcAGGaCACcccuGCGCCCGCg -3' miRNA: 3'- uuCUUUUGCa----GC-UCC-GUG----CGCGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 95036 | 0.7 | 0.730844 |
Target: 5'- cAAGAAGAcCGUCGAGGCccACGCGUacUUGUu -3' miRNA: 3'- -UUCUUUU-GCAGCUCCG--UGCGCG--GGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 94566 | 0.66 | 0.928279 |
Target: 5'- -uGggGACGcaaaGAGGCggcagcagcagGC-CGCCCGCg -3' miRNA: 3'- uuCuuUUGCag--CUCCG-----------UGcGCGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 94500 | 0.68 | 0.871298 |
Target: 5'- -cGucAACGUCuGGGCACGaGUCCGUa -3' miRNA: 3'- uuCuuUUGCAGcUCCGUGCgCGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 93202 | 0.72 | 0.629589 |
Target: 5'- uAGAAAGCGUCGucauggacgauGGGCAguCGCGCCaCGa -3' miRNA: 3'- uUCUUUUGCAGC-----------UCCGU--GCGCGG-GCg -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 89027 | 0.72 | 0.639844 |
Target: 5'- -----cAUGUCGGGGCACuCGCCUGUg -3' miRNA: 3'- uucuuuUGCAGCUCCGUGcGCGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 88093 | 0.67 | 0.905289 |
Target: 5'- cAGugcGCGUCG-GGCACaGCGUCgGCc -3' miRNA: 3'- uUCuuuUGCAGCuCCGUG-CGCGGgCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 87139 | 0.67 | 0.898948 |
Target: 5'- -cGAGAuCGUCGcGGUACugaacagcauGCGCgCCGCg -3' miRNA: 3'- uuCUUUuGCAGCuCCGUG----------CGCG-GGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 86466 | 0.66 | 0.92289 |
Target: 5'- -cGAAcACGUgGuuagcGGGUaccaACGCGCCUGCg -3' miRNA: 3'- uuCUUuUGCAgC-----UCCG----UGCGCGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 84152 | 0.77 | 0.398701 |
Target: 5'- cGGGAAGugGUCGcAGcGCGCGCGCCgGa -3' miRNA: 3'- -UUCUUUugCAGC-UC-CGUGCGCGGgCg -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 83324 | 0.66 | 0.92289 |
Target: 5'- -cGAAu-UGUCGuuaGUugGUGCCCGCa -3' miRNA: 3'- uuCUUuuGCAGCuc-CGugCGCGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 81275 | 0.68 | 0.871298 |
Target: 5'- cAAGGuuACGcUCaccaAGGUGCuGCGCCCGCu -3' miRNA: 3'- -UUCUuuUGC-AGc---UCCGUG-CGCGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 80775 | 0.67 | 0.905289 |
Target: 5'- gAAGAucuUGUCcgcgcucuaGAGGagGCGCGCCUGCg -3' miRNA: 3'- -UUCUuuuGCAG---------CUCCg-UGCGCGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 80113 | 0.66 | 0.928279 |
Target: 5'- -cGAGGAUGaCGGGGCAaGCGCagaGCa -3' miRNA: 3'- uuCUUUUGCaGCUCCGUgCGCGgg-CG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 76642 | 0.66 | 0.92289 |
Target: 5'- aGAGAAGACcaUCGAGGCcgAUGCGgCCa- -3' miRNA: 3'- -UUCUUUUGc-AGCUCCG--UGCGCgGGcg -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 76229 | 0.7 | 0.759961 |
Target: 5'- gAAGAAAGgcuguCG-CGAGGCGCGaCGaCCGCg -3' miRNA: 3'- -UUCUUUU-----GCaGCUCCGUGC-GCgGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 73045 | 0.67 | 0.905289 |
Target: 5'- cGGAAAGCGcCGGcGGUAUGCGgCCa- -3' miRNA: 3'- uUCUUUUGCaGCU-CCGUGCGCgGGcg -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 72436 | 0.66 | 0.933427 |
Target: 5'- -cGAAcGCGUCGAacacguuguaucGGCGgGCG-CCGCc -3' miRNA: 3'- uuCUUuUGCAGCU------------CCGUgCGCgGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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