Results 81 - 100 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24719 | 3' | -55.4 | NC_005264.1 | + | 70460 | 0.69 | 0.814883 |
Target: 5'- -uGAu-GCGgaaCGGGGCAgaGCGUCCGCa -3' miRNA: 3'- uuCUuuUGCa--GCUCCGUg-CGCGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 67881 | 0.67 | 0.885573 |
Target: 5'- gAGGGAAugGgccgCGAGGCccaccaccgACGCGUagauaacggCCGCa -3' miRNA: 3'- -UUCUUUugCa---GCUCCG---------UGCGCG---------GGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 67362 | 0.69 | 0.814883 |
Target: 5'- cGGAAAACGU--AGcGCcCGCGCUCGCu -3' miRNA: 3'- uUCUUUUGCAgcUC-CGuGCGCGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 67217 | 0.66 | 0.92289 |
Target: 5'- uGGGAAcCGUCG-GGCAUGUuccaagagaGCCCGa -3' miRNA: 3'- uUCUUUuGCAGCuCCGUGCG---------CGGGCg -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 66170 | 0.76 | 0.433723 |
Target: 5'- uAGAAGAUGUgaUGAGcGCAC-CGCCCGCa -3' miRNA: 3'- uUCUUUUGCA--GCUC-CGUGcGCGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 64853 | 0.68 | 0.848285 |
Target: 5'- cAGGAAcACGaagucCGGGGCugGgagauUGCCCGCa -3' miRNA: 3'- -UUCUUuUGCa----GCUCCGugC-----GCGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 63283 | 0.7 | 0.778819 |
Target: 5'- aGAGAGGACaaccggccccaGUCGGGGgAUGCGgacuCCCGCc -3' miRNA: 3'- -UUCUUUUG-----------CAGCUCCgUGCGC----GGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 62715 | 0.7 | 0.730844 |
Target: 5'- uGAGAucuuGGCGUCGGGGUAguaGUCCGCg -3' miRNA: 3'- -UUCUu---UUGCAGCUCCGUgcgCGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 62272 | 0.73 | 0.598866 |
Target: 5'- --cGAGACGaUCGcGGCACGCuucaacauGCCCGCg -3' miRNA: 3'- uucUUUUGC-AGCuCCGUGCG--------CGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 61370 | 0.67 | 0.878546 |
Target: 5'- --cAAAGCGUCGGGGU-CGCGgucucCCCGUu -3' miRNA: 3'- uucUUUUGCAGCUCCGuGCGC-----GGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 60840 | 0.67 | 0.898948 |
Target: 5'- cAGcuuGGCGUCGGcgucGGCGCGUGCgCgGCa -3' miRNA: 3'- uUCuu-UUGCAGCU----CCGUGCGCG-GgCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 58791 | 0.68 | 0.866845 |
Target: 5'- cAGAGGAUGUCGGcaaaccgauuuccgcGGCGCGCGUCa-- -3' miRNA: 3'- uUCUUUUGCAGCU---------------CCGUGCGCGGgcg -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 55566 | 0.71 | 0.710988 |
Target: 5'- gGGGGGAGCG-CGGcccacugcagcGGaCAUGCGCCCGUg -3' miRNA: 3'- -UUCUUUUGCaGCU-----------CC-GUGCGCGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 54225 | 0.68 | 0.840212 |
Target: 5'- uAGAGGccugUGUCGAGGCG-GC-CCCGCg -3' miRNA: 3'- uUCUUUu---GCAGCUCCGUgCGcGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 53563 | 0.67 | 0.892375 |
Target: 5'- -uGGAAGC-UCGcGGUacgACGCGCCCGa -3' miRNA: 3'- uuCUUUUGcAGCuCCG---UGCGCGGGCg -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 53202 | 0.7 | 0.740648 |
Target: 5'- uGGggGACGUggcCGAGGUaguggACGCGUaucuCCGCg -3' miRNA: 3'- uUCuuUUGCA---GCUCCG-----UGCGCG----GGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 52927 | 0.67 | 0.892375 |
Target: 5'- cGAGggG-CaUUGcauGGC-CGCGCCCGCg -3' miRNA: 3'- -UUCuuUuGcAGCu--CCGuGCGCGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 52447 | 0.72 | 0.639844 |
Target: 5'- -uGAGcAGCGUCa--GCAUGCGCCCGCc -3' miRNA: 3'- uuCUU-UUGCAGcucCGUGCGCGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 50545 | 0.71 | 0.700954 |
Target: 5'- cAAGAGGccUGUCGAagcuaGGCGCGCGCgUGCg -3' miRNA: 3'- -UUCUUUu-GCAGCU-----CCGUGCGCGgGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 49786 | 0.68 | 0.835277 |
Target: 5'- gAGGAGGgcacggacuaccuccGCGUCGAGGUGCaGgGCCgCGUa -3' miRNA: 3'- -UUCUUU---------------UGCAGCUCCGUG-CgCGG-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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