miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24719 3' -55.4 NC_005264.1 + 142695 0.68 0.839394
Target:  5'- ---uGGGCGcCGGcGGCGCGCcacgccuGCCCGCa -3'
miRNA:   3'- uucuUUUGCaGCU-CCGUGCG-------CGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 118927 0.72 0.650094
Target:  5'- ----cGACGUCGAGGCgACG-GCCgCGCu -3'
miRNA:   3'- uucuuUUGCAGCUCCG-UGCgCGG-GCG- -5'
24719 3' -55.4 NC_005264.1 + 122445 0.77 0.373654
Target:  5'- gGGGGAggGACGUa-GGGC-CGCGCCCGCg -3'
miRNA:   3'- -UUCUU--UUGCAgcUCCGuGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 49786 0.68 0.835277
Target:  5'- gAGGAGGgcacggacuaccuccGCGUCGAGGUGCaGgGCCgCGUa -3'
miRNA:   3'- -UUCUUU---------------UGCAGCUCCGUG-CgCGG-GCG- -5'
24719 3' -55.4 NC_005264.1 + 153149 0.87 0.09604
Target:  5'- -cGAAAcaGCGUCGAGGCGCGaGCCCGCc -3'
miRNA:   3'- uuCUUU--UGCAGCUCCGUGCgCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 60840 0.67 0.898948
Target:  5'- cAGcuuGGCGUCGGcgucGGCGCGUGCgCgGCa -3'
miRNA:   3'- uUCuu-UUGCAGCU----CCGUGCGCG-GgCG- -5'
24719 3' -55.4 NC_005264.1 + 84152 0.77 0.398701
Target:  5'- cGGGAAGugGUCGcAGcGCGCGCGCCgGa -3'
miRNA:   3'- -UUCUUUugCAGC-UC-CGUGCGCGGgCg -5'
24719 3' -55.4 NC_005264.1 + 87139 0.67 0.898948
Target:  5'- -cGAGAuCGUCGcGGUACugaacagcauGCGCgCCGCg -3'
miRNA:   3'- uuCUUUuGCAGCuCCGUG----------CGCG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 162737 0.67 0.892375
Target:  5'- aAAGGAAAC-UCGAgcGGCcCGCGUgCGCc -3'
miRNA:   3'- -UUCUUUUGcAGCU--CCGuGCGCGgGCG- -5'
24719 3' -55.4 NC_005264.1 + 81275 0.68 0.871298
Target:  5'- cAAGGuuACGcUCaccaAGGUGCuGCGCCCGCu -3'
miRNA:   3'- -UUCUuuUGC-AGc---UCCGUG-CGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 58791 0.68 0.866845
Target:  5'- cAGAGGAUGUCGGcaaaccgauuuccgcGGCGCGCGUCa-- -3'
miRNA:   3'- uUCUUUUGCAGCU---------------CCGUGCGCGGgcg -5'
24719 3' -55.4 NC_005264.1 + 128529 0.68 0.856162
Target:  5'- cAGccAGCGUC-AGGCGCGgCGCCCu- -3'
miRNA:   3'- uUCuuUUGCAGcUCCGUGC-GCGGGcg -5'
24719 3' -55.4 NC_005264.1 + 64853 0.68 0.848285
Target:  5'- cAGGAAcACGaagucCGGGGCugGgagauUGCCCGCa -3'
miRNA:   3'- -UUCUUuUGCa----GCUCCGugC-----GCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 47396 0.69 0.788055
Target:  5'- cGAGAGuggcGCGUgGuuGGGUGCGcCGCCCGUa -3'
miRNA:   3'- -UUCUUu---UGCAgC--UCCGUGC-GCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 76229 0.7 0.759961
Target:  5'- gAAGAAAGgcuguCG-CGAGGCGCGaCGaCCGCg -3'
miRNA:   3'- -UUCUUUU-----GCaGCUCCGUGC-GCgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 50545 0.71 0.700954
Target:  5'- cAAGAGGccUGUCGAagcuaGGCGCGCGCgUGCg -3'
miRNA:   3'- -UUCUUUu-GCAGCU-----CCGUGCGCGgGCG- -5'
24719 3' -55.4 NC_005264.1 + 148867 0.72 0.669521
Target:  5'- gAGGAGAGCGUaCGcaucuuuGGCGCGCGCUuaucucuCGCg -3'
miRNA:   3'- -UUCUUUUGCA-GCu------CCGUGCGCGG-------GCG- -5'
24719 3' -55.4 NC_005264.1 + 162638 0.72 0.629589
Target:  5'- gGGGGcuACGauuUCGAGGCucggaaGCGCGCCgGCg -3'
miRNA:   3'- -UUCUuuUGC---AGCUCCG------UGCGCGGgCG- -5'
24719 3' -55.4 NC_005264.1 + 114979 0.73 0.588664
Target:  5'- -cGcGAAC-UUGAGGCGCGUGCCgGCg -3'
miRNA:   3'- uuCuUUUGcAGCUCCGUGCGCGGgCG- -5'
24719 3' -55.4 NC_005264.1 + 106241 0.75 0.461128
Target:  5'- ---cGAGCGgucgCGAGGCGCucGCGCCUGCu -3'
miRNA:   3'- uucuUUUGCa---GCUCCGUG--CGCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.