miRNA display CGI


Results 61 - 80 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24719 3' -55.4 NC_005264.1 + 16188 0.68 0.863835
Target:  5'- gGAGGuagcuuGCGUcuaccggacaaCGGGGgACGCGCCgCGCu -3'
miRNA:   3'- -UUCUuu----UGCA-----------GCUCCgUGCGCGG-GCG- -5'
24719 3' -55.4 NC_005264.1 + 131220 0.71 0.680722
Target:  5'- cGAGgcAugGUCGcaGGGCgAUGCGCgCCGCc -3'
miRNA:   3'- -UUCuuUugCAGC--UCCG-UGCGCG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 150488 0.7 0.74939
Target:  5'- -cGAGAGCGUCGccgauGGGCGuggauggUGCGCCCa- -3'
miRNA:   3'- uuCUUUUGCAGC-----UCCGU-------GCGCGGGcg -5'
24719 3' -55.4 NC_005264.1 + 76229 0.7 0.759961
Target:  5'- gAAGAAAGgcuguCG-CGAGGCGCGaCGaCCGCg -3'
miRNA:   3'- -UUCUUUU-----GCaGCUCCGUGC-GCgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 122979 0.7 0.778819
Target:  5'- uAGAgGAACGUCcuGGC-CGCGCCgGCc -3'
miRNA:   3'- uUCU-UUUGCAGcuCCGuGCGCGGgCG- -5'
24719 3' -55.4 NC_005264.1 + 4483 0.69 0.79715
Target:  5'- cGGAAAcCGUCaaGGGGCGCgguGCGgCCGCu -3'
miRNA:   3'- uUCUUUuGCAG--CUCCGUG---CGCgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 67362 0.69 0.814883
Target:  5'- cGGAAAACGU--AGcGCcCGCGCUCGCu -3'
miRNA:   3'- uUCUUUUGCAgcUC-CGuGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 142695 0.68 0.839394
Target:  5'- ---uGGGCGcCGGcGGCGCGCcacgccuGCCCGCa -3'
miRNA:   3'- uucuUUUGCaGCU-CCGUGCG-------CGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 158841 0.68 0.840212
Target:  5'- uGGugGGCGagGAGGCAUGUG-CCGCc -3'
miRNA:   3'- uUCuuUUGCagCUCCGUGCGCgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 48382 0.66 0.938336
Target:  5'- -----cGCGUCGAGGCGCucgaCGUUCGUc -3'
miRNA:   3'- uucuuuUGCAGCUCCGUGc---GCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 32873 0.66 0.928279
Target:  5'- gAGGuGAACcuUgGAGGCAgGCGCCCa- -3'
miRNA:   3'- -UUCuUUUGc-AgCUCCGUgCGCGGGcg -5'
24719 3' -55.4 NC_005264.1 + 76642 0.66 0.92289
Target:  5'- aGAGAAGACcaUCGAGGCcgAUGCGgCCa- -3'
miRNA:   3'- -UUCUUUUGc-AGCUCCG--UGCGCgGGcg -5'
24719 3' -55.4 NC_005264.1 + 38397 0.68 0.871298
Target:  5'- aAAGAcaAGAUcUCGAGGCcgcggagcACGCGCuCUGCg -3'
miRNA:   3'- -UUCU--UUUGcAGCUCCG--------UGCGCG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 99542 0.67 0.885573
Target:  5'- gGGGAGAGCGaCGAGG-ACGCGUuuucUUGCg -3'
miRNA:   3'- -UUCUUUUGCaGCUCCgUGCGCG----GGCG- -5'
24719 3' -55.4 NC_005264.1 + 87139 0.67 0.898948
Target:  5'- -cGAGAuCGUCGcGGUACugaacagcauGCGCgCCGCg -3'
miRNA:   3'- uuCUUUuGCAGCuCCGUG----------CGCG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 60840 0.67 0.898948
Target:  5'- cAGcuuGGCGUCGGcgucGGCGCGUGCgCgGCa -3'
miRNA:   3'- uUCuu-UUGCAGCU----CCGUGCGCG-GgCG- -5'
24719 3' -55.4 NC_005264.1 + 17137 0.66 0.911394
Target:  5'- cGGuacGGCGUCGAGGgGCGCGgCUa- -3'
miRNA:   3'- uUCuu-UUGCAGCUCCgUGCGCgGGcg -5'
24719 3' -55.4 NC_005264.1 + 148182 0.66 0.911394
Target:  5'- gGAGGGAGCGggUGAGGuuaUugGCGgCCGUc -3'
miRNA:   3'- -UUCUUUUGCa-GCUCC---GugCGCgGGCG- -5'
24719 3' -55.4 NC_005264.1 + 67217 0.66 0.92289
Target:  5'- uGGGAAcCGUCG-GGCAUGUuccaagagaGCCCGa -3'
miRNA:   3'- uUCUUUuGCAGCuCCGUGCG---------CGGGCg -5'
24719 3' -55.4 NC_005264.1 + 128529 0.68 0.856162
Target:  5'- cAGccAGCGUC-AGGCGCGgCGCCCu- -3'
miRNA:   3'- uUCuuUUGCAGcUCCGUGC-GCGGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.