miRNA display CGI


Results 81 - 100 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24719 3' -55.4 NC_005264.1 + 154114 0.66 0.928279
Target:  5'- cGGggGGCGagcCGAaacggcGGcCACGCGCgCGCa -3'
miRNA:   3'- uUCuuUUGCa--GCU------CC-GUGCGCGgGCG- -5'
24719 3' -55.4 NC_005264.1 + 25622 0.72 0.670541
Target:  5'- cGGAAcacGGCGgcggUGGGGC-CGCGCuCCGCg -3'
miRNA:   3'- uUCUU---UUGCa---GCUCCGuGCGCG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 12193 0.71 0.680722
Target:  5'- cGAGgcAugGUCGcaGGGCgAUGCGCgCCGCc -3'
miRNA:   3'- -UUCuuUugCAGC--UCCG-UGCGCG-GGCG- -5'
24719 3' -55.4 NC_005264.1 + 13265 0.72 0.670541
Target:  5'- cGGAGGACGaCGAGGguuCGCGCCaGCg -3'
miRNA:   3'- uUCUUUUGCaGCUCCgu-GCGCGGgCG- -5'
24719 3' -55.4 NC_005264.1 + 89027 0.72 0.639844
Target:  5'- -----cAUGUCGGGGCACuCGCCUGUg -3'
miRNA:   3'- uucuuuUGCAGCUCCGUGcGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 35784 0.66 0.917262
Target:  5'- cGGAGGGCGcgguggcgccgUCGuGGCGgGCGCCUcuGCc -3'
miRNA:   3'- uUCUUUUGC-----------AGCuCCGUgCGCGGG--CG- -5'
24719 3' -55.4 NC_005264.1 + 126338 0.72 0.629589
Target:  5'- ------uCGUCGAGGcCGCGCGCUuCGCa -3'
miRNA:   3'- uucuuuuGCAGCUCC-GUGCGCGG-GCG- -5'
24719 3' -55.4 NC_005264.1 + 43611 0.72 0.629589
Target:  5'- gGGGGcuACGauuUCGAGGCucggaaGCGCGCCgGCg -3'
miRNA:   3'- -UUCUuuUGC---AGCUCCG------UGCGCGGgCG- -5'
24719 3' -55.4 NC_005264.1 + 26693 0.68 0.840212
Target:  5'- aAAGAAuuuuauuguuUGUCGGGGCGCauGCGCuccCCGCg -3'
miRNA:   3'- -UUCUUuu--------GCAGCUCCGUG--CGCG---GGCG- -5'
24719 3' -55.4 NC_005264.1 + 140694 0.68 0.855383
Target:  5'- -----cGCGgCGcaaucuaAGGCGCGCGUCCGCu -3'
miRNA:   3'- uucuuuUGCaGC-------UCCGUGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 9502 0.68 0.856162
Target:  5'- cAGccAGCGUC-AGGCGCGgCGCCCu- -3'
miRNA:   3'- uUCuuUUGCAGcUCCGUGC-GCGGGcg -5'
24719 3' -55.4 NC_005264.1 + 125094 0.67 0.878546
Target:  5'- -cGAAcucGCGUCGAcgguGGCGgGUGCCUGUu -3'
miRNA:   3'- uuCUUu--UGCAGCU----CCGUgCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 126285 0.67 0.883488
Target:  5'- -cGGAGGCGgccaugccgcuuUCGGGcGCGCggccgauggcuccuGCGCCCGCc -3'
miRNA:   3'- uuCUUUUGC------------AGCUC-CGUG--------------CGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 13349 0.77 0.381883
Target:  5'- cGAGGauGAACGUCGGGGC-CGagccgggGCCCGCg -3'
miRNA:   3'- -UUCU--UUUGCAGCUCCGuGCg------CGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 6474 0.75 0.461128
Target:  5'- cGGcGAACGUCGGGGUGCGCGgCCa- -3'
miRNA:   3'- uUCuUUUGCAGCUCCGUGCGCgGGcg -5'
24719 3' -55.4 NC_005264.1 + 131601 0.68 0.871298
Target:  5'- gGAGGGAGCGgcgCGcguGGGCGCGCGCg--- -3'
miRNA:   3'- -UUCUUUUGCa--GC---UCCGUGCGCGggcg -5'
24719 3' -55.4 NC_005264.1 + 4673 0.74 0.528347
Target:  5'- aGGGAAuaccuGCGUCGGGGCGagugGCGCCgCGUc -3'
miRNA:   3'- -UUCUUu----UGCAGCUCCGUg---CGCGG-GCG- -5'
24719 3' -55.4 NC_005264.1 + 111729 0.74 0.558276
Target:  5'- ----cAGCGUCGAGGCGCGaGCagaCCGCa -3'
miRNA:   3'- uucuuUUGCAGCUCCGUGCgCG---GGCG- -5'
24719 3' -55.4 NC_005264.1 + 15235 0.73 0.568362
Target:  5'- gAGGAcacAGugGUCGuucuGCAUGCGCCUGCg -3'
miRNA:   3'- -UUCU---UUugCAGCuc--CGUGCGCGGGCG- -5'
24719 3' -55.4 NC_005264.1 + 6134 0.73 0.568362
Target:  5'- cGGGAGGGCGa--GGGcCGCGCGCCCGUc -3'
miRNA:   3'- -UUCUUUUGCagcUCC-GUGCGCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.