Results 41 - 60 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24719 | 3' | -55.4 | NC_005264.1 | + | 72436 | 0.66 | 0.933427 |
Target: 5'- -cGAAcGCGUCGAacacguuguaucGGCGgGCG-CCGCc -3' miRNA: 3'- uuCUUuUGCAGCU------------CCGUgCGCgGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 18748 | 0.66 | 0.933427 |
Target: 5'- cGAGAAAGa--CGAGGCGCGC-UCCGa -3' miRNA: 3'- -UUCUUUUgcaGCUCCGUGCGcGGGCg -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 140271 | 0.66 | 0.93542 |
Target: 5'- aAAGcAGAACGgcuagCGAGGCuacuCGCGguuucuguaucuuucCCCGCc -3' miRNA: 3'- -UUC-UUUUGCa----GCUCCGu---GCGC---------------GGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 22667 | 0.66 | 0.936889 |
Target: 5'- uGGggGcgguCGUCGGGGUagaaaguuugcguuACGCgaagaaucGCCCGCu -3' miRNA: 3'- uUCuuUu---GCAGCUCCG--------------UGCG--------CGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 131673 | 0.66 | 0.938336 |
Target: 5'- cAGAc--CGUUGGcGGCACGUcgGCUCGCa -3' miRNA: 3'- uUCUuuuGCAGCU-CCGUGCG--CGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 34298 | 0.66 | 0.917262 |
Target: 5'- -cGAGGGCcccUCGAgGGCGcCGCGCCUGa -3' miRNA: 3'- uuCUUUUGc--AGCU-CCGU-GCGCGGGCg -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 8131 | 0.66 | 0.917262 |
Target: 5'- uGAGGAGACGcCGAGGU-CGgGUCUGa -3' miRNA: 3'- -UUCUUUUGCaGCUCCGuGCgCGGGCg -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 9502 | 0.68 | 0.856162 |
Target: 5'- cAGccAGCGUC-AGGCGCGgCGCCCu- -3' miRNA: 3'- uUCuuUUGCAGcUCCGUGC-GCGGGcg -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 131601 | 0.68 | 0.871298 |
Target: 5'- gGAGGGAGCGgcgCGcguGGGCGCGCGCg--- -3' miRNA: 3'- -UUCUUUUGCa--GC---UCCGUGCGCGggcg -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 125094 | 0.67 | 0.878546 |
Target: 5'- -cGAAcucGCGUCGAcgguGGCGgGUGCCUGUu -3' miRNA: 3'- uuCUUu--UGCAGCU----CCGUgCGCGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 126285 | 0.67 | 0.883488 |
Target: 5'- -cGGAGGCGgccaugccgcuuUCGGGcGCGCggccgauggcuccuGCGCCCGCc -3' miRNA: 3'- uuCUUUUGC------------AGCUC-CGUG--------------CGCGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 43711 | 0.67 | 0.892375 |
Target: 5'- aAAGGAAAC-UCGAgcGGCcCGCGUgCGCc -3' miRNA: 3'- -UUCUUUUGcAGCU--CCGuGCGCGgGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 53563 | 0.67 | 0.892375 |
Target: 5'- -uGGAAGC-UCGcGGUacgACGCGCCCGa -3' miRNA: 3'- uuCUUUUGcAGCuCCG---UGCGCGGGCg -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 159117 | 0.67 | 0.892375 |
Target: 5'- --cGAGACGUCgGAGaaGCcCGCCCGCg -3' miRNA: 3'- uucUUUUGCAG-CUCcgUGcGCGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 73045 | 0.67 | 0.905289 |
Target: 5'- cGGAAAGCGcCGGcGGUAUGCGgCCa- -3' miRNA: 3'- uUCUUUUGCaGCU-CCGUGCGCgGGcg -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 101353 | 0.67 | 0.905289 |
Target: 5'- -cGAGAcCG-CGGGGCGCGUcgGCgCGCu -3' miRNA: 3'- uuCUUUuGCaGCUCCGUGCG--CGgGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 80775 | 0.67 | 0.905289 |
Target: 5'- gAAGAucuUGUCcgcgcucuaGAGGagGCGCGCCUGCg -3' miRNA: 3'- -UUCUuuuGCAG---------CUCCg-UGCGCGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 98415 | 0.67 | 0.905289 |
Target: 5'- cGGcAGACGUCaucGC-CGUGCCCGCg -3' miRNA: 3'- uUCuUUUGCAGcucCGuGCGCGGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 21245 | 0.66 | 0.911394 |
Target: 5'- -uGAcGACGgcUCGAGuGUGCGCG-CCGCg -3' miRNA: 3'- uuCUuUUGC--AGCUC-CGUGCGCgGGCG- -5' |
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24719 | 3' | -55.4 | NC_005264.1 | + | 144422 | 0.66 | 0.911394 |
Target: 5'- ---cGAGCGa-GAGG-GCGCGCCUGCg -3' miRNA: 3'- uucuUUUGCagCUCCgUGCGCGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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