miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24719 5' -55.1 NC_005264.1 + 129576 0.66 0.945323
Target:  5'- gCAcCGAUCuUGCGCGCUcuGCAGgcgCUgCGg -3'
miRNA:   3'- -GUuGUUAG-ACGCGCGG--CGUCa--GAgGC- -5'
24719 5' -55.1 NC_005264.1 + 38438 0.66 0.945323
Target:  5'- aAGCAAUCga-GCGCCGguGUgaaucaUCCGc -3'
miRNA:   3'- gUUGUUAGacgCGCGGCguCAg-----AGGC- -5'
24719 5' -55.1 NC_005264.1 + 129958 0.66 0.945323
Target:  5'- -uACAGUCUGgGCGCCu--GcCUCCa -3'
miRNA:   3'- guUGUUAGACgCGCGGcguCaGAGGc -5'
24719 5' -55.1 NC_005264.1 + 48687 0.66 0.945323
Target:  5'- gGGCGcgaGUCUGCuCGUCGCGGUCgcUCgCGg -3'
miRNA:   3'- gUUGU---UAGACGcGCGGCGUCAG--AG-GC- -5'
24719 5' -55.1 NC_005264.1 + 61483 0.66 0.945323
Target:  5'- cUAGCGcgCcgacGCGCcCCGCGGUCUCgGc -3'
miRNA:   3'- -GUUGUuaGa---CGCGcGGCGUCAGAGgC- -5'
24719 5' -55.1 NC_005264.1 + 113942 0.66 0.945323
Target:  5'- cCAAUuuUCcGCGUGCCGCuuUCUCgGa -3'
miRNA:   3'- -GUUGuuAGaCGCGCGGCGucAGAGgC- -5'
24719 5' -55.1 NC_005264.1 + 157465 0.66 0.945323
Target:  5'- aAGCAAUCga-GCGCCGguGUgaaucaUCCGc -3'
miRNA:   3'- gUUGUUAGacgCGCGGCguCAg-----AGGC- -5'
24719 5' -55.1 NC_005264.1 + 24171 0.66 0.944878
Target:  5'- aGGCug-CUGCG-GCCGCGGUCgguaaagUCUGg -3'
miRNA:   3'- gUUGuuaGACGCgCGGCGUCAG-------AGGC- -5'
24719 5' -55.1 NC_005264.1 + 118926 0.66 0.940765
Target:  5'- uCGAC-GUCgagGCGacgGCCGCGcucaucGUCUCCGg -3'
miRNA:   3'- -GUUGuUAGa--CGCg--CGGCGU------CAGAGGC- -5'
24719 5' -55.1 NC_005264.1 + 107227 0.66 0.940765
Target:  5'- uGGCAuUCgGCGCcaGCCGCGGcUUUCCc -3'
miRNA:   3'- gUUGUuAGaCGCG--CGGCGUC-AGAGGc -5'
24719 5' -55.1 NC_005264.1 + 106938 0.66 0.940765
Target:  5'- uCGACAG-CUGCgGCgGCCGCAGgaUCUGa -3'
miRNA:   3'- -GUUGUUaGACG-CG-CGGCGUCagAGGC- -5'
24719 5' -55.1 NC_005264.1 + 74300 0.66 0.935968
Target:  5'- gCGGCGGUCUgGCGCGCgGCauggccaacgAGUCgucgUCGg -3'
miRNA:   3'- -GUUGUUAGA-CGCGCGgCG----------UCAGa---GGC- -5'
24719 5' -55.1 NC_005264.1 + 103481 0.66 0.935968
Target:  5'- cCAugGGUC-GCGUG-CGCAGUCugaUCCGc -3'
miRNA:   3'- -GUugUUAGaCGCGCgGCGUCAG---AGGC- -5'
24719 5' -55.1 NC_005264.1 + 72879 0.66 0.935968
Target:  5'- aCAACAGuUCUaCGCGCCaGCGGcCgCCGa -3'
miRNA:   3'- -GUUGUU-AGAcGCGCGG-CGUCaGaGGC- -5'
24719 5' -55.1 NC_005264.1 + 46248 0.66 0.934482
Target:  5'- cCGACAAuucccgcgagcUCUGCcaugaacuugcugaGCGCCGCAGcUCgcucaUCCGg -3'
miRNA:   3'- -GUUGUU-----------AGACG--------------CGCGGCGUC-AG-----AGGC- -5'
24719 5' -55.1 NC_005264.1 + 34266 0.66 0.930931
Target:  5'- gCggUAAUCcGCGUGCUGCg--CUCCGc -3'
miRNA:   3'- -GuuGUUAGaCGCGCGGCGucaGAGGC- -5'
24719 5' -55.1 NC_005264.1 + 1937 0.66 0.930931
Target:  5'- gCAAgAGUCUGUGCGCgGCcGUUgCCc -3'
miRNA:   3'- -GUUgUUAGACGCGCGgCGuCAGaGGc -5'
24719 5' -55.1 NC_005264.1 + 64782 0.66 0.930931
Target:  5'- aAACGAUCUGCGCGCaGCGccC-CCa -3'
miRNA:   3'- gUUGUUAGACGCGCGgCGUcaGaGGc -5'
24719 5' -55.1 NC_005264.1 + 120963 0.66 0.930931
Target:  5'- gCAAgAGUCUGUGCGCgGCcGUUgCCc -3'
miRNA:   3'- -GUUgUUAGACGCGCGgCGuCAGaGGc -5'
24719 5' -55.1 NC_005264.1 + 43005 0.66 0.925653
Target:  5'- gCAGCAcggCUGCGUgugGUCGUAcGUUUCCGg -3'
miRNA:   3'- -GUUGUua-GACGCG---CGGCGU-CAGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.