Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24720 | 3' | -56.2 | NC_005264.1 | + | 133745 | 1.08 | 0.003147 |
Target: 5'- cGGCGCUGGGAGCCUAUACGCAGACAUc -3' miRNA: 3'- -CCGCGACCCUCGGAUAUGCGUCUGUA- -5' |
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24720 | 3' | -56.2 | NC_005264.1 | + | 98049 | 0.72 | 0.554664 |
Target: 5'- cGGUGCccaUGGGGGCgCUGcGCGCAGAUc- -3' miRNA: 3'- -CCGCG---ACCCUCG-GAUaUGCGUCUGua -5' |
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24720 | 3' | -56.2 | NC_005264.1 | + | 95740 | 0.71 | 0.615963 |
Target: 5'- gGGCGCuggagacggccaUGGGGGaUCUGUACGCGG-CGUg -3' miRNA: 3'- -CCGCG------------ACCCUC-GGAUAUGCGUCuGUA- -5' |
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24720 | 3' | -56.2 | NC_005264.1 | + | 129410 | 0.71 | 0.626265 |
Target: 5'- aGCGC-GGGGGUUUAUucuCGCGGGCGUa -3' miRNA: 3'- cCGCGaCCCUCGGAUAu--GCGUCUGUA- -5' |
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24720 | 3' | -56.2 | NC_005264.1 | + | 43855 | 0.71 | 0.646876 |
Target: 5'- uGGCGCUGGG-GCCg--GCaaAGACGUc -3' miRNA: 3'- -CCGCGACCCuCGGauaUGcgUCUGUA- -5' |
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24720 | 3' | -56.2 | NC_005264.1 | + | 69674 | 0.7 | 0.677682 |
Target: 5'- cGGCGCUGGG-GCCUugGUucucCGCGGuuGCGUc -3' miRNA: 3'- -CCGCGACCCuCGGA--UAu---GCGUC--UGUA- -5' |
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24720 | 3' | -56.2 | NC_005264.1 | + | 15434 | 0.7 | 0.698044 |
Target: 5'- uGGCGCgaUGGGAGCUcAUGagUGUGGACAa -3' miRNA: 3'- -CCGCG--ACCCUCGGaUAU--GCGUCUGUa -5' |
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24720 | 3' | -56.2 | NC_005264.1 | + | 98511 | 0.7 | 0.708145 |
Target: 5'- aGGCGCcgacgGGGGGCCUcagucUugGCAGcgGCAa -3' miRNA: 3'- -CCGCGa----CCCUCGGAu----AugCGUC--UGUa -5' |
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24720 | 3' | -56.2 | NC_005264.1 | + | 155949 | 0.69 | 0.728143 |
Target: 5'- cGCGCUGGGAcuGCgCggcuCGCGGACGc -3' miRNA: 3'- cCGCGACCCU--CG-GauauGCGUCUGUa -5' |
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24720 | 3' | -56.2 | NC_005264.1 | + | 95794 | 0.69 | 0.732104 |
Target: 5'- aGGCGCUuccgccgcuuacgucGGGGGCCU--GCGCAaGGCc- -3' miRNA: 3'- -CCGCGA---------------CCCUCGGAuaUGCGU-CUGua -5' |
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24720 | 3' | -56.2 | NC_005264.1 | + | 74416 | 0.69 | 0.73802 |
Target: 5'- uGGCuGC-GGGAGCCcAUGuCGguGACAa -3' miRNA: 3'- -CCG-CGaCCCUCGGaUAU-GCguCUGUa -5' |
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24720 | 3' | -56.2 | NC_005264.1 | + | 137289 | 0.69 | 0.747804 |
Target: 5'- cGGCGUUGGcGGCg---ACGCGGGCGUa -3' miRNA: 3'- -CCGCGACCcUCGgauaUGCGUCUGUA- -5' |
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24720 | 3' | -56.2 | NC_005264.1 | + | 21559 | 0.69 | 0.747804 |
Target: 5'- cGGCaCUGGGGGUUg--GgGCAGGCAUg -3' miRNA: 3'- -CCGcGACCCUCGGauaUgCGUCUGUA- -5' |
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24720 | 3' | -56.2 | NC_005264.1 | + | 116426 | 0.69 | 0.757485 |
Target: 5'- aGGuCGCUGGGGGCguCUGgccGCGgGGGCGa -3' miRNA: 3'- -CC-GCGACCCUCG--GAUa--UGCgUCUGUa -5' |
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24720 | 3' | -56.2 | NC_005264.1 | + | 59802 | 0.69 | 0.767054 |
Target: 5'- -cCGCcGcGGAGCC-GUACGUAGACGUg -3' miRNA: 3'- ccGCGaC-CCUCGGaUAUGCGUCUGUA- -5' |
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24720 | 3' | -56.2 | NC_005264.1 | + | 18059 | 0.69 | 0.767054 |
Target: 5'- cGGCGCcGcGAGCCagggcGCGCGGGCAUu -3' miRNA: 3'- -CCGCGaCcCUCGGaua--UGCGUCUGUA- -5' |
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24720 | 3' | -56.2 | NC_005264.1 | + | 136359 | 0.68 | 0.776501 |
Target: 5'- gGGCGCUGGGcgcuGCCg--GCGCGaAUAg -3' miRNA: 3'- -CCGCGACCCu---CGGauaUGCGUcUGUa -5' |
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24720 | 3' | -56.2 | NC_005264.1 | + | 62031 | 0.68 | 0.811127 |
Target: 5'- cGCGCUcuagcaagguucGGAGCCUGcUGCGcCAGGCGUg -3' miRNA: 3'- cCGCGAc-----------CCUCGGAU-AUGC-GUCUGUA- -5' |
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24720 | 3' | -56.2 | NC_005264.1 | + | 53112 | 0.67 | 0.82159 |
Target: 5'- aGGCGCUcggcgaGGGGGCCgaggagGC-CGGGCAa -3' miRNA: 3'- -CCGCGA------CCCUCGGaua---UGcGUCUGUa -5' |
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24720 | 3' | -56.2 | NC_005264.1 | + | 102164 | 0.67 | 0.838462 |
Target: 5'- aGGCcUUGGGAGCCcagcUGCGC-GACGa -3' miRNA: 3'- -CCGcGACCCUCGGau--AUGCGuCUGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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