miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24720 3' -56.2 NC_005264.1 + 137289 0.69 0.747804
Target:  5'- cGGCGUUGGcGGCg---ACGCGGGCGUa -3'
miRNA:   3'- -CCGCGACCcUCGgauaUGCGUCUGUA- -5'
24720 3' -56.2 NC_005264.1 + 21559 0.69 0.747804
Target:  5'- cGGCaCUGGGGGUUg--GgGCAGGCAUg -3'
miRNA:   3'- -CCGcGACCCUCGGauaUgCGUCUGUA- -5'
24720 3' -56.2 NC_005264.1 + 74416 0.69 0.73802
Target:  5'- uGGCuGC-GGGAGCCcAUGuCGguGACAa -3'
miRNA:   3'- -CCG-CGaCCCUCGGaUAU-GCguCUGUa -5'
24720 3' -56.2 NC_005264.1 + 95794 0.69 0.732104
Target:  5'- aGGCGCUuccgccgcuuacgucGGGGGCCU--GCGCAaGGCc- -3'
miRNA:   3'- -CCGCGA---------------CCCUCGGAuaUGCGU-CUGua -5'
24720 3' -56.2 NC_005264.1 + 155949 0.69 0.728143
Target:  5'- cGCGCUGGGAcuGCgCggcuCGCGGACGc -3'
miRNA:   3'- cCGCGACCCU--CG-GauauGCGUCUGUa -5'
24720 3' -56.2 NC_005264.1 + 98511 0.7 0.708145
Target:  5'- aGGCGCcgacgGGGGGCCUcagucUugGCAGcgGCAa -3'
miRNA:   3'- -CCGCGa----CCCUCGGAu----AugCGUC--UGUa -5'
24720 3' -56.2 NC_005264.1 + 15434 0.7 0.698044
Target:  5'- uGGCGCgaUGGGAGCUcAUGagUGUGGACAa -3'
miRNA:   3'- -CCGCG--ACCCUCGGaUAU--GCGUCUGUa -5'
24720 3' -56.2 NC_005264.1 + 69674 0.7 0.677682
Target:  5'- cGGCGCUGGG-GCCUugGUucucCGCGGuuGCGUc -3'
miRNA:   3'- -CCGCGACCCuCGGA--UAu---GCGUC--UGUA- -5'
24720 3' -56.2 NC_005264.1 + 43855 0.71 0.646876
Target:  5'- uGGCGCUGGG-GCCg--GCaaAGACGUc -3'
miRNA:   3'- -CCGCGACCCuCGGauaUGcgUCUGUA- -5'
24720 3' -56.2 NC_005264.1 + 129410 0.71 0.626265
Target:  5'- aGCGC-GGGGGUUUAUucuCGCGGGCGUa -3'
miRNA:   3'- cCGCGaCCCUCGGAUAu--GCGUCUGUA- -5'
24720 3' -56.2 NC_005264.1 + 95740 0.71 0.615963
Target:  5'- gGGCGCuggagacggccaUGGGGGaUCUGUACGCGG-CGUg -3'
miRNA:   3'- -CCGCG------------ACCCUC-GGAUAUGCGUCuGUA- -5'
24720 3' -56.2 NC_005264.1 + 98049 0.72 0.554664
Target:  5'- cGGUGCccaUGGGGGCgCUGcGCGCAGAUc- -3'
miRNA:   3'- -CCGCG---ACCCUCG-GAUaUGCGUCUGua -5'
24720 3' -56.2 NC_005264.1 + 133745 1.08 0.003147
Target:  5'- cGGCGCUGGGAGCCUAUACGCAGACAUc -3'
miRNA:   3'- -CCGCGACCCUCGGAUAUGCGUCUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.