Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24720 | 5' | -53.6 | NC_005264.1 | + | 51098 | 0.66 | 0.946032 |
Target: 5'- -gGUCgccggUGCUGCGGucugcuCGCGCCUCGa -3' miRNA: 3'- ugUAGaa---ACGAUGUCc-----GCGCGGAGUc -5' |
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24720 | 5' | -53.6 | NC_005264.1 | + | 70142 | 0.7 | 0.79868 |
Target: 5'- aACGUgcUUGCUGCcgcGGCgGCGCCUCAc -3' miRNA: 3'- -UGUAgaAACGAUGu--CCG-CGCGGAGUc -5' |
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24720 | 5' | -53.6 | NC_005264.1 | + | 149415 | 0.7 | 0.834168 |
Target: 5'- cGCGUCUcgGCggcgGCGGucGCGCGCCggugCGGa -3' miRNA: 3'- -UGUAGAaaCGa---UGUC--CGCGCGGa---GUC- -5' |
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24720 | 5' | -53.6 | NC_005264.1 | + | 54409 | 0.69 | 0.874128 |
Target: 5'- -aGUCgUUGUUGCGcGGCGCGCCgacUAGg -3' miRNA: 3'- ugUAGaAACGAUGU-CCGCGCGGa--GUC- -5' |
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24720 | 5' | -53.6 | NC_005264.1 | + | 93425 | 0.69 | 0.881462 |
Target: 5'- uACAUaCUccgacgGCgGCAGGCGCGCCUa-- -3' miRNA: 3'- -UGUA-GAaa----CGaUGUCCGCGCGGAguc -5' |
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24720 | 5' | -53.6 | NC_005264.1 | + | 97425 | 0.69 | 0.881462 |
Target: 5'- gGCAgugagcGCUGCGGGCGCcGCCgCGGa -3' miRNA: 3'- -UGUagaaa-CGAUGUCCGCG-CGGaGUC- -5' |
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24720 | 5' | -53.6 | NC_005264.1 | + | 61235 | 0.68 | 0.901392 |
Target: 5'- cACGUUg--GCgaugGCGcgcuccagcucacGGCGCGCCUCGGc -3' miRNA: 3'- -UGUAGaaaCGa---UGU-------------CCGCGCGGAGUC- -5' |
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24720 | 5' | -53.6 | NC_005264.1 | + | 66195 | 0.68 | 0.908417 |
Target: 5'- cGCAUCg--GCggGC-GGUGCGCCUCc- -3' miRNA: 3'- -UGUAGaaaCGa-UGuCCGCGCGGAGuc -5' |
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24720 | 5' | -53.6 | NC_005264.1 | + | 90214 | 0.68 | 0.913942 |
Target: 5'- cGCAUCggUGUUAUuugcgaugaacgaGGGgGUGCUUCAGg -3' miRNA: 3'- -UGUAGaaACGAUG-------------UCCgCGCGGAGUC- -5' |
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24720 | 5' | -53.6 | NC_005264.1 | + | 82025 | 0.74 | 0.610332 |
Target: 5'- uCGUCUUUGUcccaagggucuacgaUgcGCAGGCGCGCCUCc- -3' miRNA: 3'- uGUAGAAACG---------------A--UGUCCGCGCGGAGuc -5' |
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24720 | 5' | -53.6 | NC_005264.1 | + | 133782 | 1.08 | 0.005146 |
Target: 5'- gACAUCUUUGCUACAGGCGCGCCUCAGc -3' miRNA: 3'- -UGUAGAAACGAUGUCCGCGCGGAGUC- -5' |
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24720 | 5' | -53.6 | NC_005264.1 | + | 19718 | 0.67 | 0.943289 |
Target: 5'- uGCGUUUUUGUUACAGGaucuucuagguucgcCGUGCCccCAGc -3' miRNA: 3'- -UGUAGAAACGAUGUCC---------------GCGCGGa-GUC- -5' |
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24720 | 5' | -53.6 | NC_005264.1 | + | 65603 | 0.66 | 0.962091 |
Target: 5'- cACAUCUUgcUGCUGCGuuCGCGgCUCGu -3' miRNA: 3'- -UGUAGAA--ACGAUGUccGCGCgGAGUc -5' |
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24720 | 5' | -53.6 | NC_005264.1 | + | 21340 | 0.66 | 0.965519 |
Target: 5'- uGCAUUgc-GCUGCcguucgucccGGGC-CGCCUCGGc -3' miRNA: 3'- -UGUAGaaaCGAUG----------UCCGcGCGGAGUC- -5' |
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24720 | 5' | -53.6 | NC_005264.1 | + | 126411 | 0.66 | 0.958054 |
Target: 5'- uCGUCUccgcgGcCUGCAGGUacuugggGCGCCUCAc -3' miRNA: 3'- uGUAGAaa---C-GAUGUCCG-------CGCGGAGUc -5' |
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24720 | 5' | -53.6 | NC_005264.1 | + | 55860 | 0.66 | 0.946032 |
Target: 5'- gGCGUCUaUGCgGCuccuGGCGaugGCCUCAc -3' miRNA: 3'- -UGUAGAaACGaUGu---CCGCg--CGGAGUc -5' |
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24720 | 5' | -53.6 | NC_005264.1 | + | 58680 | 0.67 | 0.936539 |
Target: 5'- -------cGCUGCAGGCGCacccgGCCUCu- -3' miRNA: 3'- uguagaaaCGAUGUCCGCG-----CGGAGuc -5' |
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24720 | 5' | -53.6 | NC_005264.1 | + | 86553 | 0.69 | 0.881462 |
Target: 5'- -aAUCUUUGCUcaaacaguCGGGUGCGCaCUCuGg -3' miRNA: 3'- ugUAGAAACGAu-------GUCCGCGCG-GAGuC- -5' |
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24720 | 5' | -53.6 | NC_005264.1 | + | 71672 | 0.69 | 0.874128 |
Target: 5'- cACGUgUUUGCUGCAccccGGCGUG-UUCAGa -3' miRNA: 3'- -UGUAgAAACGAUGU----CCGCGCgGAGUC- -5' |
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24720 | 5' | -53.6 | NC_005264.1 | + | 30388 | 0.7 | 0.834168 |
Target: 5'- cGCGUCUcgGCggcgGCGGucGCGCGCCggugCGGa -3' miRNA: 3'- -UGUAGAaaCGa---UGUC--CGCGCGGa---GUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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