miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24722 3' -61.9 NC_005264.1 + 58689 0.66 0.712008
Target:  5'- aGGCaCGCGUuuuCUauUCGGUUCGGGUcaGCCa -3'
miRNA:   3'- -UCG-GCGCAu--GG--AGCCAGGCUCG--CGGc -5'
24722 3' -61.9 NC_005264.1 + 78645 0.66 0.712008
Target:  5'- cGCCGCGgcggcccugUGCCUC-GUCCcacuauGUGCCGg -3'
miRNA:   3'- uCGGCGC---------AUGGAGcCAGGcu----CGCGGC- -5'
24722 3' -61.9 NC_005264.1 + 146346 0.66 0.702505
Target:  5'- cGCCgGCGUGCCUCGaccCCGcAG-GCCa -3'
miRNA:   3'- uCGG-CGCAUGGAGCca-GGC-UCgCGGc -5'
24722 3' -61.9 NC_005264.1 + 157946 0.66 0.702505
Target:  5'- cGGCCaGCGUgGCCUCGaacUCCGcGUGUCGc -3'
miRNA:   3'- -UCGG-CGCA-UGGAGCc--AGGCuCGCGGC- -5'
24722 3' -61.9 NC_005264.1 + 122797 0.66 0.702505
Target:  5'- cGCUGCGggcCCUUGGUC-GAcCGCCGc -3'
miRNA:   3'- uCGGCGCau-GGAGCCAGgCUcGCGGC- -5'
24722 3' -61.9 NC_005264.1 + 3771 0.66 0.702505
Target:  5'- cGCUGCGggcCCUUGGUC-GAcCGCCGc -3'
miRNA:   3'- uCGGCGCau-GGAGCCAGgCUcGCGGC- -5'
24722 3' -61.9 NC_005264.1 + 98437 0.66 0.692949
Target:  5'- cGCgGCGUcgGCCUUGG-CCGGGCuuCCa -3'
miRNA:   3'- uCGgCGCA--UGGAGCCaGGCUCGc-GGc -5'
24722 3' -61.9 NC_005264.1 + 33794 0.66 0.692949
Target:  5'- gAGCCGCGcacgccGCUUUGGaCCGGcuCGCCGg -3'
miRNA:   3'- -UCGGCGCa-----UGGAGCCaGGCUc-GCGGC- -5'
24722 3' -61.9 NC_005264.1 + 61441 0.66 0.683346
Target:  5'- cGGcCCGCu--CCUCGGcgCCGAguugcucgaGCGCCGu -3'
miRNA:   3'- -UC-GGCGcauGGAGCCa-GGCU---------CGCGGC- -5'
24722 3' -61.9 NC_005264.1 + 8218 0.66 0.683346
Target:  5'- -cCCGCG-GCCgcuGGUCCGAGUacGCCa -3'
miRNA:   3'- ucGGCGCaUGGag-CCAGGCUCG--CGGc -5'
24722 3' -61.9 NC_005264.1 + 30450 0.66 0.683346
Target:  5'- gAGCCGCGgGCCccggcUCGGccCCGAcguucauccucGCGCCc -3'
miRNA:   3'- -UCGGCGCaUGG-----AGCCa-GGCU-----------CGCGGc -5'
24722 3' -61.9 NC_005264.1 + 149477 0.66 0.683346
Target:  5'- gAGCCGCGgGCCccggcUCGGccCCGAcguucauccucGCGCCc -3'
miRNA:   3'- -UCGGCGCaUGG-----AGCCa-GGCU-----------CGCGGc -5'
24722 3' -61.9 NC_005264.1 + 64153 0.66 0.682384
Target:  5'- cGCCGCG-AUC-CGG-CCGgugugcaAGCGCCGc -3'
miRNA:   3'- uCGGCGCaUGGaGCCaGGC-------UCGCGGC- -5'
24722 3' -61.9 NC_005264.1 + 23417 0.66 0.682384
Target:  5'- gAGCaCGCGUacGCCagCGGUgcccgucUCGAGUGCCc -3'
miRNA:   3'- -UCG-GCGCA--UGGa-GCCA-------GGCUCGCGGc -5'
24722 3' -61.9 NC_005264.1 + 107700 0.66 0.680458
Target:  5'- -uUUGCGgGCCUCGagcauuaucugaacGUCCGAGUGCCc -3'
miRNA:   3'- ucGGCGCaUGGAGC--------------CAGGCUCGCGGc -5'
24722 3' -61.9 NC_005264.1 + 95546 0.66 0.673706
Target:  5'- cGCCGCGaUACCcuUCGaagCCGAcGCGCUa -3'
miRNA:   3'- uCGGCGC-AUGG--AGCca-GGCU-CGCGGc -5'
24722 3' -61.9 NC_005264.1 + 37339 0.66 0.673706
Target:  5'- uGGCCGCGcACCcCGacGUUCGccGCGCCGc -3'
miRNA:   3'- -UCGGCGCaUGGaGC--CAGGCu-CGCGGC- -5'
24722 3' -61.9 NC_005264.1 + 138472 0.66 0.673706
Target:  5'- gAGCCGCGaAgC-CGGUCaugccaGAGCGgCGg -3'
miRNA:   3'- -UCGGCGCaUgGaGCCAGg-----CUCGCgGC- -5'
24722 3' -61.9 NC_005264.1 + 156366 0.66 0.673706
Target:  5'- uGGCCGCGcACCcCGacGUUCGccGCGCCGc -3'
miRNA:   3'- -UCGGCGCaUGGaGC--CAGGCu-CGCGGC- -5'
24722 3' -61.9 NC_005264.1 + 79125 0.66 0.673706
Target:  5'- cGCCGCGUACCUag--CCGc-CGCCa -3'
miRNA:   3'- uCGGCGCAUGGAgccaGGCucGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.