miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24722 5' -59.1 NC_005264.1 + 73872 0.65 0.785492
Target:  5'- gAACGAGUUcgagcugugcuaugCGCGCGACgAGaaagacgucgaCUGCCUGa -3'
miRNA:   3'- -UUGCUCAA--------------GCGCGCUGgUC-----------GGCGGAU- -5'
24722 5' -59.1 NC_005264.1 + 120166 0.66 0.779093
Target:  5'- gGACGGGcgcaCGgGaCGAuCCGGCCGCCa- -3'
miRNA:   3'- -UUGCUCaa--GCgC-GCU-GGUCGGCGGau -5'
24722 5' -59.1 NC_005264.1 + 1139 0.66 0.779093
Target:  5'- gGACGGGcgcaCGgGaCGAuCCGGCCGCCa- -3'
miRNA:   3'- -UUGCUCaa--GCgC-GCU-GGUCGGCGGau -5'
24722 5' -59.1 NC_005264.1 + 69343 0.66 0.76047
Target:  5'- --aGGGaaCGaCGCG-CCGGCCGCCa- -3'
miRNA:   3'- uugCUCaaGC-GCGCuGGUCGGCGGau -5'
24722 5' -59.1 NC_005264.1 + 6371 0.66 0.750987
Target:  5'- cAUGAacUCG-GCGACCAGCCGCUc- -3'
miRNA:   3'- uUGCUcaAGCgCGCUGGUCGGCGGau -5'
24722 5' -59.1 NC_005264.1 + 63034 0.66 0.750987
Target:  5'- -cCGGGgUCG-GCGACCaucgccucGGCCGCCUu -3'
miRNA:   3'- uuGCUCaAGCgCGCUGG--------UCGGCGGAu -5'
24722 5' -59.1 NC_005264.1 + 10455 0.66 0.750987
Target:  5'- aGACGAGggCagaGUGACC-GCCGCCg- -3'
miRNA:   3'- -UUGCUCaaGcg-CGCUGGuCGGCGGau -5'
24722 5' -59.1 NC_005264.1 + 125398 0.66 0.750987
Target:  5'- cAUGAacUCG-GCGACCAGCCGCUc- -3'
miRNA:   3'- uUGCUcaAGCgCGCUGGUCGGCGGau -5'
24722 5' -59.1 NC_005264.1 + 43906 0.66 0.750987
Target:  5'- aGACGAua--GCGCGGCC-GUCGCCUc -3'
miRNA:   3'- -UUGCUcaagCGCGCUGGuCGGCGGAu -5'
24722 5' -59.1 NC_005264.1 + 2826 0.66 0.741402
Target:  5'- aAACGGGUUgGCGgagGGCCGGUCGCgCUc -3'
miRNA:   3'- -UUGCUCAAgCGCg--CUGGUCGGCG-GAu -5'
24722 5' -59.1 NC_005264.1 + 128089 0.66 0.741402
Target:  5'- uAGCGAcagCG-GCGACCGGCgCGCCg- -3'
miRNA:   3'- -UUGCUcaaGCgCGCUGGUCG-GCGGau -5'
24722 5' -59.1 NC_005264.1 + 121852 0.66 0.741402
Target:  5'- aAACGGGUUgGCGgagGGCCGGUCGCgCUc -3'
miRNA:   3'- -UUGCUCAAgCGCg--CUGGUCGGCG-GAu -5'
24722 5' -59.1 NC_005264.1 + 12473 0.67 0.735605
Target:  5'- cAGCGAGUUCuuGCGUGGCCGGUgaacuagauaacgugCGCUa- -3'
miRNA:   3'- -UUGCUCAAG--CGCGCUGGUCG---------------GCGGau -5'
24722 5' -59.1 NC_005264.1 + 131500 0.67 0.735605
Target:  5'- cAGCGAGUUCuuGCGUGGCCGGUgaacuagauaacgugCGCUa- -3'
miRNA:   3'- -UUGCUCAAG--CGCGCUGGUCG---------------GCGGau -5'
24722 5' -59.1 NC_005264.1 + 106511 0.67 0.731723
Target:  5'- cAACGAGgcggUGCGCGACggcggcagcgCGGCCGCg-- -3'
miRNA:   3'- -UUGCUCaa--GCGCGCUG----------GUCGGCGgau -5'
24722 5' -59.1 NC_005264.1 + 808 0.67 0.72196
Target:  5'- uACGGcuGggUGCGCGGCCGGCUuuaGCCUc -3'
miRNA:   3'- uUGCU--CaaGCGCGCUGGUCGG---CGGAu -5'
24722 5' -59.1 NC_005264.1 + 103071 0.67 0.72196
Target:  5'- cGACGAGUcccgcgaagcgUC-CGCGuCgCAGCCGCCg- -3'
miRNA:   3'- -UUGCUCA-----------AGcGCGCuG-GUCGGCGGau -5'
24722 5' -59.1 NC_005264.1 + 105861 0.67 0.72196
Target:  5'- aAGCGAGcgCGgGCGACgAgggacucgucGCCGCCa- -3'
miRNA:   3'- -UUGCUCaaGCgCGCUGgU----------CGGCGGau -5'
24722 5' -59.1 NC_005264.1 + 151403 0.67 0.712121
Target:  5'- uGGCGAGgaUGCcgGCGGCCGGCgucCGCCg- -3'
miRNA:   3'- -UUGCUCaaGCG--CGCUGGUCG---GCGGau -5'
24722 5' -59.1 NC_005264.1 + 19520 0.67 0.712121
Target:  5'- cGACGAGaagcUCGgGaCGGCC-GCCGCCa- -3'
miRNA:   3'- -UUGCUCa---AGCgC-GCUGGuCGGCGGau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.