miRNA display CGI


Results 21 - 40 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24723 3' -51.4 NC_005264.1 + 63219 0.66 0.994831
Target:  5'- uCCGGGUcuuucCGCAUAacgGCC-AUGUCCa -3'
miRNA:   3'- -GGCUCAuau--GCGUGUg--CGGcUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 14718 0.66 0.994021
Target:  5'- gCGuGUGUACGCGCACGU----GUCg -3'
miRNA:   3'- gGCuCAUAUGCGUGUGCGgcuaCAGg -5'
24723 3' -51.4 NC_005264.1 + 139149 0.66 0.994021
Target:  5'- gUCG-GUcgGCGUucccGCACGUCGAUGcguaaUCCg -3'
miRNA:   3'- -GGCuCAuaUGCG----UGUGCGGCUAC-----AGG- -5'
24723 3' -51.4 NC_005264.1 + 45865 0.66 0.994021
Target:  5'- uUCGAGUcUGCGCGC-CGCCaAUG-Ca -3'
miRNA:   3'- -GGCUCAuAUGCGUGuGCGGcUACaGg -5'
24723 3' -51.4 NC_005264.1 + 54126 0.66 0.993112
Target:  5'- -aGAGUu--CGaGCGCGCCGggGUCg -3'
miRNA:   3'- ggCUCAuauGCgUGUGCGGCuaCAGg -5'
24723 3' -51.4 NC_005264.1 + 43661 0.66 0.993112
Target:  5'- aCG-GUcgGCGCgcuGCGCGCCGgcGUUa -3'
miRNA:   3'- gGCuCAuaUGCG---UGUGCGGCuaCAGg -5'
24723 3' -51.4 NC_005264.1 + 45568 0.67 0.992096
Target:  5'- cCCGuGUcgGCGCGCACGa----GUCCc -3'
miRNA:   3'- -GGCuCAuaUGCGUGUGCggcuaCAGG- -5'
24723 3' -51.4 NC_005264.1 + 133677 0.67 0.992096
Target:  5'- -aGAGga-ACGCcuGCuCGCCGcgGUCCu -3'
miRNA:   3'- ggCUCauaUGCG--UGuGCGGCuaCAGG- -5'
24723 3' -51.4 NC_005264.1 + 88117 0.67 0.98832
Target:  5'- gCCGgcgcGGU-UGCGUACGgGCUGAUGgCCg -3'
miRNA:   3'- -GGC----UCAuAUGCGUGUgCGGCUACaGG- -5'
24723 3' -51.4 NC_005264.1 + 68826 0.67 0.98679
Target:  5'- uCCGAGUGgaacgGCGCgagaaacgGCA-GCCGAUGaagguaucuUCCg -3'
miRNA:   3'- -GGCUCAUa----UGCG--------UGUgCGGCUAC---------AGG- -5'
24723 3' -51.4 NC_005264.1 + 149248 0.67 0.98679
Target:  5'- gCCG-GUGUgGCGCugGgGCCGAaGcCCu -3'
miRNA:   3'- -GGCuCAUA-UGCGugUgCGGCUaCaGG- -5'
24723 3' -51.4 NC_005264.1 + 144420 0.67 0.991431
Target:  5'- gCCGAGcgAgaggGCGCGCcuGCGCCGGccggaacgguggucgUuGUCCg -3'
miRNA:   3'- -GGCUCa-Ua---UGCGUG--UGCGGCU---------------A-CAGG- -5'
24723 3' -51.4 NC_005264.1 + 5623 0.67 0.992096
Target:  5'- aUCGGGc---CGCGCgACGCUaGGUGUCCc -3'
miRNA:   3'- -GGCUCauauGCGUG-UGCGG-CUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 103551 0.67 0.98832
Target:  5'- -aGGGcccACGUuCACGCCGAUGUUa -3'
miRNA:   3'- ggCUCauaUGCGuGUGCGGCUACAGg -5'
24723 3' -51.4 NC_005264.1 + 28346 0.67 0.992202
Target:  5'- aCGGGUAgcggGCGaCACGCGCaauuggagugcggcaGAauUGUCCc -3'
miRNA:   3'- gGCUCAUa---UGC-GUGUGCGg--------------CU--ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 124650 0.67 0.992096
Target:  5'- aUCGGGc---CGCGCgACGCUaGGUGUCCc -3'
miRNA:   3'- -GGCUCauauGCGUG-UGCGG-CUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 99825 0.67 0.98679
Target:  5'- cCCGGGguaaggcuggaGUGCGCcaaGCACGCCuuGGaGUCCg -3'
miRNA:   3'- -GGCUCa----------UAUGCG---UGUGCGG--CUaCAGG- -5'
24723 3' -51.4 NC_005264.1 + 27674 0.68 0.979095
Target:  5'- aCCGAG-GUACGCgGCugGCCucUG-CCu -3'
miRNA:   3'- -GGCUCaUAUGCG-UGugCGGcuACaGG- -5'
24723 3' -51.4 NC_005264.1 + 4790 0.68 0.976735
Target:  5'- aCUGGGUcGUugGCGaACGCCcugGUCCa -3'
miRNA:   3'- -GGCUCA-UAugCGUgUGCGGcuaCAGG- -5'
24723 3' -51.4 NC_005264.1 + 24503 0.68 0.985112
Target:  5'- uUCGGGcgccuUGUcGCGCACGCGCC-AUGaCCa -3'
miRNA:   3'- -GGCUC-----AUA-UGCGUGUGCGGcUACaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.