Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24723 | 3' | -51.4 | NC_005264.1 | + | 27929 | 0.71 | 0.931869 |
Target: 5'- aCCGcGGUGUugGCguucuGCGCGUCGGUgGUCg -3' miRNA: 3'- -GGC-UCAUAugCG-----UGUGCGGCUA-CAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 48338 | 0.71 | 0.93688 |
Target: 5'- cCUGGGgaGUugGCGCACGCC-AUGgcggCCu -3' miRNA: 3'- -GGCUCa-UAugCGUGUGCGGcUACa---GG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 60523 | 0.71 | 0.93688 |
Target: 5'- gUGAGUAaccUACGCAUGCcgGCCGAggUGUCg -3' miRNA: 3'- gGCUCAU---AUGCGUGUG--CGGCU--ACAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 137121 | 0.71 | 0.931869 |
Target: 5'- aCCGAGU--ACGCAC-CGCUGccGcCCg -3' miRNA: 3'- -GGCUCAuaUGCGUGuGCGGCuaCaGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 94723 | 0.7 | 0.946177 |
Target: 5'- gCCGAGUAUGa--GCGCGCCu-UGUCg -3' miRNA: 3'- -GGCUCAUAUgcgUGUGCGGcuACAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 14541 | 0.7 | 0.941648 |
Target: 5'- aCCGGc---GCGCACGCGCgCGGUcUCCa -3' miRNA: 3'- -GGCUcauaUGCGUGUGCG-GCUAcAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 63352 | 0.7 | 0.941648 |
Target: 5'- aCGAGUGUguccGCGUACGCGauucUGUCCa -3' miRNA: 3'- gGCUCAUA----UGCGUGUGCggcuACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 84865 | 0.7 | 0.954526 |
Target: 5'- cCCGcuccgGUACGCGCgGCGCCGGcagGUCUc -3' miRNA: 3'- -GGCuca--UAUGCGUG-UGCGGCUa--CAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 45988 | 0.7 | 0.950469 |
Target: 5'- cCUGAGUAUACGC-CAgGCgGcaguAUGUUCg -3' miRNA: 3'- -GGCUCAUAUGCGuGUgCGgC----UACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 112036 | 0.7 | 0.946177 |
Target: 5'- ------cUGCGCGCGCGCCGA--UCCg -3' miRNA: 3'- ggcucauAUGCGUGUGCGGCUacAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 7152 | 0.7 | 0.950469 |
Target: 5'- cCUGAGgcUACGC-CcUGCCGAguacaccccgcUGUCCa -3' miRNA: 3'- -GGCUCauAUGCGuGuGCGGCU-----------ACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 82325 | 0.7 | 0.950469 |
Target: 5'- aCGAcGU-UGCGCAcCGCGgCGAUGUUCu -3' miRNA: 3'- gGCU-CAuAUGCGU-GUGCgGCUACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 117268 | 0.69 | 0.961951 |
Target: 5'- uCCGAGggacuCGUGCGCGCCGAcacgggcgaagaUG-CCa -3' miRNA: 3'- -GGCUCauau-GCGUGUGCGGCU------------ACaGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 75240 | 0.69 | 0.961951 |
Target: 5'- gCCGucuuGUAUaACGCgaccACGCGCCG-UGUUCg -3' miRNA: 3'- -GGCu---CAUA-UGCG----UGUGCGGCuACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 143290 | 0.69 | 0.961951 |
Target: 5'- aCCGAGgaagaGCAC-CGCCGAaucGUCUa -3' miRNA: 3'- -GGCUCauaugCGUGuGCGGCUa--CAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 50330 | 0.69 | 0.97144 |
Target: 5'- gCGAGU--ACGCG-GCGUCGAccuUGUCCu -3' miRNA: 3'- gGCUCAuaUGCGUgUGCGGCU---ACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 46281 | 0.69 | 0.968489 |
Target: 5'- gCCGAGc-UGCGCAUcgACGCCGcc-UCCg -3' miRNA: 3'- -GGCUCauAUGCGUG--UGCGGCuacAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 74497 | 0.69 | 0.965328 |
Target: 5'- aCGuGgcUGCGCgGCugGUgGAUGUCUa -3' miRNA: 3'- gGCuCauAUGCG-UGugCGgCUACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 91919 | 0.69 | 0.961951 |
Target: 5'- aCCGAGUccgugucucuGUACuGUgguguagcgGCAUGCCGAUGaCCa -3' miRNA: 3'- -GGCUCA----------UAUG-CG---------UGUGCGGCUACaGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 127990 | 0.69 | 0.961951 |
Target: 5'- -aGAGUuaGCGUACACGUCGcUGUUg -3' miRNA: 3'- ggCUCAuaUGCGUGUGCGGCuACAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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