miRNA display CGI


Results 81 - 96 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24723 3' -51.4 NC_005264.1 + 45406 0.66 0.996185
Target:  5'- gCGAacGUGUGCGCcgACgAUGCCaGGUGUUCc -3'
miRNA:   3'- gGCU--CAUAUGCG--UG-UGCGG-CUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 82129 0.66 0.993935
Target:  5'- cUCGAgGUAUAUGCACGCGaggaucgCGGaaacuuuuuugucUGUCCu -3'
miRNA:   3'- -GGCU-CAUAUGCGUGUGCg------GCU-------------ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 71410 0.66 0.993112
Target:  5'- cCCGuGgcUAUGaCACAgacucCGCCGGUGcCCc -3'
miRNA:   3'- -GGCuCauAUGC-GUGU-----GCGGCUACaGG- -5'
24723 3' -51.4 NC_005264.1 + 162687 0.66 0.993112
Target:  5'- aCG-GUcgGCGCgcuGCGCGCCGgcGUUa -3'
miRNA:   3'- gGCuCAuaUGCG---UGUGCGGCuaCAGg -5'
24723 3' -51.4 NC_005264.1 + 3625 0.66 0.996185
Target:  5'- gCGAGg--GCGgGCGCGCUGAcauucGUCg -3'
miRNA:   3'- gGCUCauaUGCgUGUGCGGCUa----CAGg -5'
24723 3' -51.4 NC_005264.1 + 43661 0.66 0.993112
Target:  5'- aCG-GUcgGCGCgcuGCGCGCCGgcGUUa -3'
miRNA:   3'- gGCuCAuaUGCG---UGUGCGGCuaCAGg -5'
24723 3' -51.4 NC_005264.1 + 54126 0.66 0.993112
Target:  5'- -aGAGUu--CGaGCGCGCCGggGUCg -3'
miRNA:   3'- ggCUCAuauGCgUGUGCGGCuaCAGg -5'
24723 3' -51.4 NC_005264.1 + 45865 0.66 0.994021
Target:  5'- uUCGAGUcUGCGCGC-CGCCaAUG-Ca -3'
miRNA:   3'- -GGCUCAuAUGCGUGuGCGGcUACaGg -5'
24723 3' -51.4 NC_005264.1 + 139149 0.66 0.994021
Target:  5'- gUCG-GUcgGCGUucccGCACGUCGAUGcguaaUCCg -3'
miRNA:   3'- -GGCuCAuaUGCG----UGUGCGGCUAC-----AGG- -5'
24723 3' -51.4 NC_005264.1 + 14718 0.66 0.994021
Target:  5'- gCGuGUGUACGCGCACGU----GUCg -3'
miRNA:   3'- gGCuCAUAUGCGUGUGCGgcuaCAGg -5'
24723 3' -51.4 NC_005264.1 + 63219 0.66 0.994831
Target:  5'- uCCGGGUcuuucCGCAUAacgGCC-AUGUCCa -3'
miRNA:   3'- -GGCUCAuau--GCGUGUg--CGGcUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 68430 0.66 0.994831
Target:  5'- gCGAuc--GCGCAgucCGCGCCGcgGUCUg -3'
miRNA:   3'- gGCUcauaUGCGU---GUGCGGCuaCAGG- -5'
24723 3' -51.4 NC_005264.1 + 111842 0.66 0.995343
Target:  5'- gCGAGUAUcuucCGCAC-CGCUGccggguagcggagcGUGUCUg -3'
miRNA:   3'- gGCUCAUAu---GCGUGuGCGGC--------------UACAGG- -5'
24723 3' -51.4 NC_005264.1 + 20555 0.66 0.995343
Target:  5'- gCGAG-AUAUGUaucgcgcucugccaGCGCGCgGGUGuUCCa -3'
miRNA:   3'- gGCUCaUAUGCG--------------UGUGCGgCUAC-AGG- -5'
24723 3' -51.4 NC_005264.1 + 141131 0.66 0.99555
Target:  5'- ------cUGCGCGCACGgCCGggGUCa -3'
miRNA:   3'- ggcucauAUGCGUGUGC-GGCuaCAGg -5'
24723 3' -51.4 NC_005264.1 + 61457 0.66 0.996185
Target:  5'- gCCGAGUugcucgaGCGCcguucguucuaGCGCGCCGAcGcgCCc -3'
miRNA:   3'- -GGCUCAua-----UGCG-----------UGUGCGGCUaCa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.