miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24723 3' -51.4 NC_005264.1 + 27929 0.71 0.931869
Target:  5'- aCCGcGGUGUugGCguucuGCGCGUCGGUgGUCg -3'
miRNA:   3'- -GGC-UCAUAugCG-----UGUGCGGCUA-CAGg -5'
24723 3' -51.4 NC_005264.1 + 137121 0.71 0.931869
Target:  5'- aCCGAGU--ACGCAC-CGCUGccGcCCg -3'
miRNA:   3'- -GGCUCAuaUGCGUGuGCGGCuaCaGG- -5'
24723 3' -51.4 NC_005264.1 + 48338 0.71 0.93688
Target:  5'- cCUGGGgaGUugGCGCACGCC-AUGgcggCCu -3'
miRNA:   3'- -GGCUCa-UAugCGUGUGCGGcUACa---GG- -5'
24723 3' -51.4 NC_005264.1 + 60523 0.71 0.93688
Target:  5'- gUGAGUAaccUACGCAUGCcgGCCGAggUGUCg -3'
miRNA:   3'- gGCUCAU---AUGCGUGUG--CGGCU--ACAGg -5'
24723 3' -51.4 NC_005264.1 + 14541 0.7 0.941648
Target:  5'- aCCGGc---GCGCACGCGCgCGGUcUCCa -3'
miRNA:   3'- -GGCUcauaUGCGUGUGCG-GCUAcAGG- -5'
24723 3' -51.4 NC_005264.1 + 63352 0.7 0.941648
Target:  5'- aCGAGUGUguccGCGUACGCGauucUGUCCa -3'
miRNA:   3'- gGCUCAUA----UGCGUGUGCggcuACAGG- -5'
24723 3' -51.4 NC_005264.1 + 112036 0.7 0.946177
Target:  5'- ------cUGCGCGCGCGCCGA--UCCg -3'
miRNA:   3'- ggcucauAUGCGUGUGCGGCUacAGG- -5'
24723 3' -51.4 NC_005264.1 + 94723 0.7 0.946177
Target:  5'- gCCGAGUAUGa--GCGCGCCu-UGUCg -3'
miRNA:   3'- -GGCUCAUAUgcgUGUGCGGcuACAGg -5'
24723 3' -51.4 NC_005264.1 + 7152 0.7 0.950469
Target:  5'- cCUGAGgcUACGC-CcUGCCGAguacaccccgcUGUCCa -3'
miRNA:   3'- -GGCUCauAUGCGuGuGCGGCU-----------ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 45988 0.7 0.950469
Target:  5'- cCUGAGUAUACGC-CAgGCgGcaguAUGUUCg -3'
miRNA:   3'- -GGCUCAUAUGCGuGUgCGgC----UACAGG- -5'
24723 3' -51.4 NC_005264.1 + 82325 0.7 0.950469
Target:  5'- aCGAcGU-UGCGCAcCGCGgCGAUGUUCu -3'
miRNA:   3'- gGCU-CAuAUGCGU-GUGCgGCUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 84865 0.7 0.954526
Target:  5'- cCCGcuccgGUACGCGCgGCGCCGGcagGUCUc -3'
miRNA:   3'- -GGCuca--UAUGCGUG-UGCGGCUa--CAGG- -5'
24723 3' -51.4 NC_005264.1 + 75240 0.69 0.961951
Target:  5'- gCCGucuuGUAUaACGCgaccACGCGCCG-UGUUCg -3'
miRNA:   3'- -GGCu---CAUA-UGCG----UGUGCGGCuACAGG- -5'
24723 3' -51.4 NC_005264.1 + 143290 0.69 0.961951
Target:  5'- aCCGAGgaagaGCAC-CGCCGAaucGUCUa -3'
miRNA:   3'- -GGCUCauaugCGUGuGCGGCUa--CAGG- -5'
24723 3' -51.4 NC_005264.1 + 91919 0.69 0.961951
Target:  5'- aCCGAGUccgugucucuGUACuGUgguguagcgGCAUGCCGAUGaCCa -3'
miRNA:   3'- -GGCUCA----------UAUG-CG---------UGUGCGGCUACaGG- -5'
24723 3' -51.4 NC_005264.1 + 117268 0.69 0.961951
Target:  5'- uCCGAGggacuCGUGCGCGCCGAcacgggcgaagaUG-CCa -3'
miRNA:   3'- -GGCUCauau-GCGUGUGCGGCU------------ACaGG- -5'
24723 3' -51.4 NC_005264.1 + 127990 0.69 0.961951
Target:  5'- -aGAGUuaGCGUACACGUCGcUGUUg -3'
miRNA:   3'- ggCUCAuaUGCGUGUGCGGCuACAGg -5'
24723 3' -51.4 NC_005264.1 + 74497 0.69 0.965328
Target:  5'- aCGuGgcUGCGCgGCugGUgGAUGUCUa -3'
miRNA:   3'- gGCuCauAUGCG-UGugCGgCUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 8232 0.69 0.967563
Target:  5'- uCCGAGUAcgccaGCGCgguuagucuggccaGCgGCGCCcuGGUGUCCg -3'
miRNA:   3'- -GGCUCAUa----UGCG--------------UG-UGCGG--CUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 46281 0.69 0.968489
Target:  5'- gCCGAGc-UGCGCAUcgACGCCGcc-UCCg -3'
miRNA:   3'- -GGCUCauAUGCGUG--UGCGGCuacAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.