miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24723 3' -51.4 NC_005264.1 + 77389 0.68 0.985112
Target:  5'- -gGAGUcgGCcCAgACGCCGGcaagcgcucccUGUCCg -3'
miRNA:   3'- ggCUCAuaUGcGUgUGCGGCU-----------ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 85500 0.68 0.985112
Target:  5'- -aGAGgugACGCggucuGCACGCCG--GUCCa -3'
miRNA:   3'- ggCUCauaUGCG-----UGUGCGGCuaCAGG- -5'
24723 3' -51.4 NC_005264.1 + 24503 0.68 0.985112
Target:  5'- uUCGGGcgccuUGUcGCGCACGCGCC-AUGaCCa -3'
miRNA:   3'- -GGCUC-----AUA-UGCGUGUGCGGcUACaGG- -5'
24723 3' -51.4 NC_005264.1 + 149296 0.68 0.983275
Target:  5'- aCCaGGUugGCGCACugGUuauCGAUGcUCCa -3'
miRNA:   3'- -GGcUCAuaUGCGUGugCG---GCUAC-AGG- -5'
24723 3' -51.4 NC_005264.1 + 12962 0.68 0.983275
Target:  5'- aCCGGGcg-GCGCGCGcCGCCGAc---- -3'
miRNA:   3'- -GGCUCauaUGCGUGU-GCGGCUacagg -5'
24723 3' -51.4 NC_005264.1 + 104813 0.68 0.983275
Target:  5'- aCGAGcggGCGcCGCACGaCGGccUGUCCg -3'
miRNA:   3'- gGCUCauaUGC-GUGUGCgGCU--ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 21565 0.68 0.981272
Target:  5'- uCCGAGg--ACGCcgGCGCCGAga-CCg -3'
miRNA:   3'- -GGCUCauaUGCGugUGCGGCUacaGG- -5'
24723 3' -51.4 NC_005264.1 + 82343 0.68 0.979987
Target:  5'- gCUGAGUAgACGCACgugugccaggcaggcGCGUCGA--UCCg -3'
miRNA:   3'- -GGCUCAUaUGCGUG---------------UGCGGCUacAGG- -5'
24723 3' -51.4 NC_005264.1 + 56801 0.68 0.979095
Target:  5'- -gGAG---GCGCAU-CGCCGGUGUCg -3'
miRNA:   3'- ggCUCauaUGCGUGuGCGGCUACAGg -5'
24723 3' -51.4 NC_005264.1 + 22714 0.68 0.979095
Target:  5'- aCGAGUGcgGCGCGCAaGCguGUGUCUg -3'
miRNA:   3'- gGCUCAUa-UGCGUGUgCGgcUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 27674 0.68 0.979095
Target:  5'- aCCGAG-GUACGCgGCugGCCucUG-CCu -3'
miRNA:   3'- -GGCUCaUAUGCG-UGugCGGcuACaGG- -5'
24723 3' -51.4 NC_005264.1 + 4790 0.68 0.976735
Target:  5'- aCUGGGUcGUugGCGaACGCCcugGUCCa -3'
miRNA:   3'- -GGCUCA-UAugCGUgUGCGGcuaCAGG- -5'
24723 3' -51.4 NC_005264.1 + 123816 0.68 0.976735
Target:  5'- aCUGGGUcGUugGCGaACGCCcugGUCCa -3'
miRNA:   3'- -GGCUCA-UAugCGUgUGCGGcuaCAGG- -5'
24723 3' -51.4 NC_005264.1 + 9124 0.69 0.97144
Target:  5'- gCCGAGUAgguaguaACGCaACAcCGCCaccagaGAUGUCUc -3'
miRNA:   3'- -GGCUCAUa------UGCG-UGU-GCGG------CUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 50330 0.69 0.97144
Target:  5'- gCGAGU--ACGCG-GCGUCGAccuUGUCCu -3'
miRNA:   3'- gGCUCAuaUGCGUgUGCGGCU---ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 40416 0.69 0.97144
Target:  5'- aCGcGUA-ACGCACucgccuuuccCGUCGAUGUCCu -3'
miRNA:   3'- gGCuCAUaUGCGUGu---------GCGGCUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 46281 0.69 0.968489
Target:  5'- gCCGAGc-UGCGCAUcgACGCCGcc-UCCg -3'
miRNA:   3'- -GGCUCauAUGCGUG--UGCGGCuacAGG- -5'
24723 3' -51.4 NC_005264.1 + 8232 0.69 0.967563
Target:  5'- uCCGAGUAcgccaGCGCgguuagucuggccaGCgGCGCCcuGGUGUCCg -3'
miRNA:   3'- -GGCUCAUa----UGCG--------------UG-UGCGG--CUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 74497 0.69 0.965328
Target:  5'- aCGuGgcUGCGCgGCugGUgGAUGUCUa -3'
miRNA:   3'- gGCuCauAUGCG-UGugCGgCUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 127990 0.69 0.961951
Target:  5'- -aGAGUuaGCGUACACGUCGcUGUUg -3'
miRNA:   3'- ggCUCAuaUGCGUGUGCGGCuACAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.