miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24723 3' -51.4 NC_005264.1 + 48338 0.71 0.93688
Target:  5'- cCUGGGgaGUugGCGCACGCC-AUGgcggCCu -3'
miRNA:   3'- -GGCUCa-UAugCGUGUGCGGcUACa---GG- -5'
24723 3' -51.4 NC_005264.1 + 50330 0.69 0.97144
Target:  5'- gCGAGU--ACGCG-GCGUCGAccuUGUCCu -3'
miRNA:   3'- gGCUCAuaUGCGUgUGCGGCU---ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 54126 0.66 0.993112
Target:  5'- -aGAGUu--CGaGCGCGCCGggGUCg -3'
miRNA:   3'- ggCUCAuauGCgUGUGCGGCuaCAGg -5'
24723 3' -51.4 NC_005264.1 + 56801 0.68 0.979095
Target:  5'- -gGAG---GCGCAU-CGCCGGUGUCg -3'
miRNA:   3'- ggCUCauaUGCGUGuGCGGCUACAGg -5'
24723 3' -51.4 NC_005264.1 + 58369 0.73 0.868598
Target:  5'- gCGGGgccgGCGCGauauGCGCCGGauUGUCCa -3'
miRNA:   3'- gGCUCaua-UGCGUg---UGCGGCU--ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 60523 0.71 0.93688
Target:  5'- gUGAGUAaccUACGCAUGCcgGCCGAggUGUCg -3'
miRNA:   3'- gGCUCAU---AUGCGUGUG--CGGCU--ACAGg -5'
24723 3' -51.4 NC_005264.1 + 61457 0.66 0.996185
Target:  5'- gCCGAGUugcucgaGCGCcguucguucuaGCGCGCCGAcGcgCCc -3'
miRNA:   3'- -GGCUCAua-----UGCG-----------UGUGCGGCUaCa-GG- -5'
24723 3' -51.4 NC_005264.1 + 63219 0.66 0.994831
Target:  5'- uCCGGGUcuuucCGCAUAacgGCC-AUGUCCa -3'
miRNA:   3'- -GGCUCAuau--GCGUGUg--CGGcUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 63352 0.7 0.941648
Target:  5'- aCGAGUGUguccGCGUACGCGauucUGUCCa -3'
miRNA:   3'- gGCUCAUA----UGCGUGUGCggcuACAGG- -5'
24723 3' -51.4 NC_005264.1 + 68430 0.66 0.994831
Target:  5'- gCGAuc--GCGCAgucCGCGCCGcgGUCUg -3'
miRNA:   3'- gGCUcauaUGCGU---GUGCGGCuaCAGG- -5'
24723 3' -51.4 NC_005264.1 + 68826 0.67 0.98679
Target:  5'- uCCGAGUGgaacgGCGCgagaaacgGCA-GCCGAUGaagguaucuUCCg -3'
miRNA:   3'- -GGCUCAUa----UGCG--------UGUgCGGCUAC---------AGG- -5'
24723 3' -51.4 NC_005264.1 + 69405 0.72 0.896726
Target:  5'- gCGGGUAgGCGCGCcUGCCGccGUCg -3'
miRNA:   3'- gGCUCAUaUGCGUGuGCGGCuaCAGg -5'
24723 3' -51.4 NC_005264.1 + 71305 0.73 0.861014
Target:  5'- aCCacAGUGUGCGCaACAcCGCCGAguUGUUCg -3'
miRNA:   3'- -GGc-UCAUAUGCG-UGU-GCGGCU--ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 71410 0.66 0.993112
Target:  5'- cCCGuGgcUAUGaCACAgacucCGCCGGUGcCCc -3'
miRNA:   3'- -GGCuCauAUGC-GUGU-----GCGGCUACaGG- -5'
24723 3' -51.4 NC_005264.1 + 74497 0.69 0.965328
Target:  5'- aCGuGgcUGCGCgGCugGUgGAUGUCUa -3'
miRNA:   3'- gGCuCauAUGCG-UGugCGgCUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 75240 0.69 0.961951
Target:  5'- gCCGucuuGUAUaACGCgaccACGCGCCG-UGUUCg -3'
miRNA:   3'- -GGCu---CAUA-UGCG----UGUGCGGCuACAGG- -5'
24723 3' -51.4 NC_005264.1 + 77389 0.68 0.985112
Target:  5'- -gGAGUcgGCcCAgACGCCGGcaagcgcucccUGUCCg -3'
miRNA:   3'- ggCUCAuaUGcGUgUGCGGCU-----------ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 78521 0.68 0.985112
Target:  5'- gCUGGGU--ACGCGC-CGCUGgcGUCUu -3'
miRNA:   3'- -GGCUCAuaUGCGUGuGCGGCuaCAGG- -5'
24723 3' -51.4 NC_005264.1 + 82129 0.66 0.993935
Target:  5'- cUCGAgGUAUAUGCACGCGaggaucgCGGaaacuuuuuugucUGUCCu -3'
miRNA:   3'- -GGCU-CAUAUGCGUGUGCg------GCU-------------ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 82325 0.7 0.950469
Target:  5'- aCGAcGU-UGCGCAcCGCGgCGAUGUUCu -3'
miRNA:   3'- gGCU-CAuAUGCGU-GUGCgGCUACAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.