Results 81 - 96 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24723 | 3' | -51.4 | NC_005264.1 | + | 124650 | 0.67 | 0.992096 |
Target: 5'- aUCGGGc---CGCGCgACGCUaGGUGUCCc -3' miRNA: 3'- -GGCUCauauGCGUG-UGCGG-CUACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 127990 | 0.69 | 0.961951 |
Target: 5'- -aGAGUuaGCGUACACGUCGcUGUUg -3' miRNA: 3'- ggCUCAuaUGCGUGUGCGGCuACAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 128638 | 0.73 | 0.837028 |
Target: 5'- gCCaAGUAUGCGCucCAUGCCGcggcugcUGUCCa -3' miRNA: 3'- -GGcUCAUAUGCGu-GUGCGGCu------ACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 133677 | 0.67 | 0.992096 |
Target: 5'- -aGAGga-ACGCcuGCuCGCCGcgGUCCu -3' miRNA: 3'- ggCUCauaUGCG--UGuGCGGCuaCAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 135837 | 1.15 | 0.004241 |
Target: 5'- gCCGAGUAUACGCACACGCCGAUGUCCg -3' miRNA: 3'- -GGCUCAUAUGCGUGUGCGGCUACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 137121 | 0.71 | 0.931869 |
Target: 5'- aCCGAGU--ACGCAC-CGCUGccGcCCg -3' miRNA: 3'- -GGCUCAuaUGCGUGuGCGGCuaCaGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 139149 | 0.66 | 0.994021 |
Target: 5'- gUCG-GUcgGCGUucccGCACGUCGAUGcguaaUCCg -3' miRNA: 3'- -GGCuCAuaUGCG----UGUGCGGCUAC-----AGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 141131 | 0.66 | 0.99555 |
Target: 5'- ------cUGCGCGCACGgCCGggGUCa -3' miRNA: 3'- ggcucauAUGCGUGUGC-GGCuaCAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 143290 | 0.69 | 0.961951 |
Target: 5'- aCCGAGgaagaGCAC-CGCCGAaucGUCUa -3' miRNA: 3'- -GGCUCauaugCGUGuGCGGCUa--CAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 144420 | 0.67 | 0.991431 |
Target: 5'- gCCGAGcgAgaggGCGCGCcuGCGCCGGccggaacgguggucgUuGUCCg -3' miRNA: 3'- -GGCUCa-Ua---UGCGUG--UGCGGCU---------------A-CAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 148303 | 0.76 | 0.696175 |
Target: 5'- aCCGcGc--GCGUGCGCGCCGGUGUUCg -3' miRNA: 3'- -GGCuCauaUGCGUGUGCGGCUACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 149248 | 0.67 | 0.98679 |
Target: 5'- gCCG-GUGUgGCGCugGgGCCGAaGcCCu -3' miRNA: 3'- -GGCuCAUA-UGCGugUgCGGCUaCaGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 149296 | 0.68 | 0.983275 |
Target: 5'- aCCaGGUugGCGCACugGUuauCGAUGcUCCa -3' miRNA: 3'- -GGcUCAuaUGCGUGugCG---GCUAC-AGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 150987 | 0.74 | 0.828644 |
Target: 5'- gCGAGUGgcgGCG-ACGgGCCGcGUGUCCg -3' miRNA: 3'- gGCUCAUa--UGCgUGUgCGGC-UACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 158295 | 0.73 | 0.868598 |
Target: 5'- cCCGAGacUugGCGCgACGCCGAaGaCCa -3' miRNA: 3'- -GGCUCauAugCGUG-UGCGGCUaCaGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 162687 | 0.66 | 0.993112 |
Target: 5'- aCG-GUcgGCGCgcuGCGCGCCGgcGUUa -3' miRNA: 3'- gGCuCAuaUGCG---UGUGCGGCuaCAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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