miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24723 3' -51.4 NC_005264.1 + 112036 0.7 0.946177
Target:  5'- ------cUGCGCGCGCGCCGA--UCCg -3'
miRNA:   3'- ggcucauAUGCGUGUGCGGCUacAGG- -5'
24723 3' -51.4 NC_005264.1 + 111842 0.66 0.995343
Target:  5'- gCGAGUAUcuucCGCAC-CGCUGccggguagcggagcGUGUCUg -3'
miRNA:   3'- gGCUCAUAu---GCGUGuGCGGC--------------UACAGG- -5'
24723 3' -51.4 NC_005264.1 + 108232 0.74 0.811341
Target:  5'- gCCGAuGUcc-CGCACGCGCCGAgg-CCg -3'
miRNA:   3'- -GGCU-CAuauGCGUGUGCGGCUacaGG- -5'
24723 3' -51.4 NC_005264.1 + 104813 0.68 0.983275
Target:  5'- aCGAGcggGCGcCGCACGaCGGccUGUCCg -3'
miRNA:   3'- gGCUCauaUGC-GUGUGCgGCU--ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 103551 0.67 0.98832
Target:  5'- -aGGGcccACGUuCACGCCGAUGUUa -3'
miRNA:   3'- ggCUCauaUGCGuGUGCGGCUACAGg -5'
24723 3' -51.4 NC_005264.1 + 101971 0.71 0.923348
Target:  5'- gCCGAGagacuagaaaaacuuUGccGCGCACGCGCCGAcG-CCg -3'
miRNA:   3'- -GGCUC---------------AUa-UGCGUGUGCGGCUaCaGG- -5'
24723 3' -51.4 NC_005264.1 + 99825 0.67 0.98679
Target:  5'- cCCGGGguaaggcuggaGUGCGCcaaGCACGCCuuGGaGUCCg -3'
miRNA:   3'- -GGCUCa----------UAUGCG---UGUGCGG--CUaCAGG- -5'
24723 3' -51.4 NC_005264.1 + 95104 0.66 0.996185
Target:  5'- gCCGAG-AUACGCGaagGCGCCac-GUCg -3'
miRNA:   3'- -GGCUCaUAUGCGUg--UGCGGcuaCAGg -5'
24723 3' -51.4 NC_005264.1 + 94723 0.7 0.946177
Target:  5'- gCCGAGUAUGa--GCGCGCCu-UGUCg -3'
miRNA:   3'- -GGCUCAUAUgcgUGUGCGGcuACAGg -5'
24723 3' -51.4 NC_005264.1 + 91919 0.69 0.961951
Target:  5'- aCCGAGUccgugucucuGUACuGUgguguagcgGCAUGCCGAUGaCCa -3'
miRNA:   3'- -GGCUCA----------UAUG-CG---------UGUGCGGCUACaGG- -5'
24723 3' -51.4 NC_005264.1 + 88117 0.67 0.98832
Target:  5'- gCCGgcgcGGU-UGCGUACGgGCUGAUGgCCg -3'
miRNA:   3'- -GGC----UCAuAUGCGUGUgCGGCUACaGG- -5'
24723 3' -51.4 NC_005264.1 + 85500 0.68 0.985112
Target:  5'- -aGAGgugACGCggucuGCACGCCG--GUCCa -3'
miRNA:   3'- ggCUCauaUGCG-----UGUGCGGCuaCAGG- -5'
24723 3' -51.4 NC_005264.1 + 84865 0.7 0.954526
Target:  5'- cCCGcuccgGUACGCGCgGCGCCGGcagGUCUc -3'
miRNA:   3'- -GGCuca--UAUGCGUG-UGCGGCUa--CAGG- -5'
24723 3' -51.4 NC_005264.1 + 84150 0.72 0.890035
Target:  5'- cCCGGGaagugGUcgcaGCGCGCGCGCCGGaccUGUUUa -3'
miRNA:   3'- -GGCUCa----UA----UGCGUGUGCGGCU---ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 83775 0.73 0.861014
Target:  5'- gUGAGUAUAaccucguaGUACACGCCGuaguUGUCa -3'
miRNA:   3'- gGCUCAUAUg-------CGUGUGCGGCu---ACAGg -5'
24723 3' -51.4 NC_005264.1 + 82343 0.68 0.979987
Target:  5'- gCUGAGUAgACGCACgugugccaggcaggcGCGUCGA--UCCg -3'
miRNA:   3'- -GGCUCAUaUGCGUG---------------UGCGGCUacAGG- -5'
24723 3' -51.4 NC_005264.1 + 82325 0.7 0.950469
Target:  5'- aCGAcGU-UGCGCAcCGCGgCGAUGUUCu -3'
miRNA:   3'- gGCU-CAuAUGCGU-GUGCgGCUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 82129 0.66 0.993935
Target:  5'- cUCGAgGUAUAUGCACGCGaggaucgCGGaaacuuuuuugucUGUCCu -3'
miRNA:   3'- -GGCU-CAUAUGCGUGUGCg------GCU-------------ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 78521 0.68 0.985112
Target:  5'- gCUGGGU--ACGCGC-CGCUGgcGUCUu -3'
miRNA:   3'- -GGCUCAuaUGCGUGuGCGGCuaCAGG- -5'
24723 3' -51.4 NC_005264.1 + 77389 0.68 0.985112
Target:  5'- -gGAGUcgGCcCAgACGCCGGcaagcgcucccUGUCCg -3'
miRNA:   3'- ggCUCAuaUGcGUgUGCGGCU-----------ACAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.