miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24723 3' -51.4 NC_005264.1 + 144420 0.67 0.991431
Target:  5'- gCCGAGcgAgaggGCGCGCcuGCGCCGGccggaacgguggucgUuGUCCg -3'
miRNA:   3'- -GGCUCa-Ua---UGCGUG--UGCGGCU---------------A-CAGG- -5'
24723 3' -51.4 NC_005264.1 + 5623 0.67 0.992096
Target:  5'- aUCGGGc---CGCGCgACGCUaGGUGUCCc -3'
miRNA:   3'- -GGCUCauauGCGUG-UGCGG-CUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 54126 0.66 0.993112
Target:  5'- -aGAGUu--CGaGCGCGCCGggGUCg -3'
miRNA:   3'- ggCUCAuauGCgUGUGCGGCuaCAGg -5'
24723 3' -51.4 NC_005264.1 + 14718 0.66 0.994021
Target:  5'- gCGuGUGUACGCGCACGU----GUCg -3'
miRNA:   3'- gGCuCAUAUGCGUGUGCGgcuaCAGg -5'
24723 3' -51.4 NC_005264.1 + 63219 0.66 0.994831
Target:  5'- uCCGGGUcuuucCGCAUAacgGCC-AUGUCCa -3'
miRNA:   3'- -GGCUCAuau--GCGUGUg--CGGcUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 68430 0.66 0.994831
Target:  5'- gCGAuc--GCGCAgucCGCGCCGcgGUCUg -3'
miRNA:   3'- gGCUcauaUGCGU---GUGCGGCuaCAGG- -5'
24723 3' -51.4 NC_005264.1 + 4790 0.68 0.976735
Target:  5'- aCUGGGUcGUugGCGaACGCCcugGUCCa -3'
miRNA:   3'- -GGCUCA-UAugCGUgUGCGGcuaCAGG- -5'
24723 3' -51.4 NC_005264.1 + 50330 0.69 0.97144
Target:  5'- gCGAGU--ACGCG-GCGUCGAccuUGUCCu -3'
miRNA:   3'- gGCUCAuaUGCGUgUGCGGCU---ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 46281 0.69 0.968489
Target:  5'- gCCGAGc-UGCGCAUcgACGCCGcc-UCCg -3'
miRNA:   3'- -GGCUCauAUGCGUG--UGCGGCuacAGG- -5'
24723 3' -51.4 NC_005264.1 + 21254 0.75 0.755751
Target:  5'- cUCGAGUGUGCGCGC-CGCggaGGUGguaacgCCa -3'
miRNA:   3'- -GGCUCAUAUGCGUGuGCGg--CUACa-----GG- -5'
24723 3' -51.4 NC_005264.1 + 108232 0.74 0.811341
Target:  5'- gCCGAuGUcc-CGCACGCGCCGAgg-CCg -3'
miRNA:   3'- -GGCU-CAuauGCGUGUGCGGCUacaGG- -5'
24723 3' -51.4 NC_005264.1 + 31960 0.74 0.828644
Target:  5'- gCGAGUGgcgGCG-ACGgGCCGcGUGUCCg -3'
miRNA:   3'- gGCUCAUa--UGCgUGUgCGGC-UACAGG- -5'
24723 3' -51.4 NC_005264.1 + 128638 0.73 0.837028
Target:  5'- gCCaAGUAUGCGCucCAUGCCGcggcugcUGUCCa -3'
miRNA:   3'- -GGcUCAUAUGCGu-GUGCGGCu------ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 16833 0.73 0.853219
Target:  5'- cCCGAGcccauaACGCGCACGCCGuagagGcCCu -3'
miRNA:   3'- -GGCUCaua---UGCGUGUGCGGCua---CaGG- -5'
24723 3' -51.4 NC_005264.1 + 71305 0.73 0.861014
Target:  5'- aCCacAGUGUGCGCaACAcCGCCGAguUGUUCg -3'
miRNA:   3'- -GGc-UCAUAUGCG-UGU-GCGGCU--ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 84865 0.7 0.954526
Target:  5'- cCCGcuccgGUACGCGCgGCGCCGGcagGUCUc -3'
miRNA:   3'- -GGCuca--UAUGCGUG-UGCGGCUa--CAGG- -5'
24723 3' -51.4 NC_005264.1 + 127990 0.69 0.961951
Target:  5'- -aGAGUuaGCGUACACGUCGcUGUUg -3'
miRNA:   3'- ggCUCAuaUGCGUGUGCGGCuACAGg -5'
24723 3' -51.4 NC_005264.1 + 117268 0.69 0.961951
Target:  5'- uCCGAGggacuCGUGCGCGCCGAcacgggcgaagaUG-CCa -3'
miRNA:   3'- -GGCUCauau-GCGUGUGCGGCU------------ACaGG- -5'
24723 3' -51.4 NC_005264.1 + 91919 0.69 0.961951
Target:  5'- aCCGAGUccgugucucuGUACuGUgguguagcgGCAUGCCGAUGaCCa -3'
miRNA:   3'- -GGCUCA----------UAUG-CG---------UGUGCGGCUACaGG- -5'
24723 3' -51.4 NC_005264.1 + 74497 0.69 0.965328
Target:  5'- aCGuGgcUGCGCgGCugGUgGAUGUCUa -3'
miRNA:   3'- gGCuCauAUGCG-UGugCGgCUACAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.