Results 81 - 96 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24723 | 3' | -51.4 | NC_005264.1 | + | 16833 | 0.73 | 0.853219 |
Target: 5'- cCCGAGcccauaACGCGCACGCCGuagagGcCCu -3' miRNA: 3'- -GGCUCaua---UGCGUGUGCGGCua---CaGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 128638 | 0.73 | 0.837028 |
Target: 5'- gCCaAGUAUGCGCucCAUGCCGcggcugcUGUCCa -3' miRNA: 3'- -GGcUCAUAUGCGu-GUGCGGCu------ACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 31960 | 0.74 | 0.828644 |
Target: 5'- gCGAGUGgcgGCG-ACGgGCCGcGUGUCCg -3' miRNA: 3'- gGCUCAUa--UGCgUGUgCGGC-UACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 108232 | 0.74 | 0.811341 |
Target: 5'- gCCGAuGUcc-CGCACGCGCCGAgg-CCg -3' miRNA: 3'- -GGCU-CAuauGCGUGUGCGGCUacaGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 14541 | 0.7 | 0.941648 |
Target: 5'- aCCGGc---GCGCACGCGCgCGGUcUCCa -3' miRNA: 3'- -GGCUcauaUGCGUGUGCG-GCUAcAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 94723 | 0.7 | 0.946177 |
Target: 5'- gCCGAGUAUGa--GCGCGCCu-UGUCg -3' miRNA: 3'- -GGCUCAUAUgcgUGUGCGGcuACAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 4790 | 0.68 | 0.976735 |
Target: 5'- aCUGGGUcGUugGCGaACGCCcugGUCCa -3' miRNA: 3'- -GGCUCA-UAugCGUgUGCGGcuaCAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 50330 | 0.69 | 0.97144 |
Target: 5'- gCGAGU--ACGCG-GCGUCGAccuUGUCCu -3' miRNA: 3'- gGCUCAuaUGCGUgUGCGGCU---ACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 46281 | 0.69 | 0.968489 |
Target: 5'- gCCGAGc-UGCGCAUcgACGCCGcc-UCCg -3' miRNA: 3'- -GGCUCauAUGCGUG--UGCGGCuacAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 74497 | 0.69 | 0.965328 |
Target: 5'- aCGuGgcUGCGCgGCugGUgGAUGUCUa -3' miRNA: 3'- gGCuCauAUGCG-UGugCGgCUACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 91919 | 0.69 | 0.961951 |
Target: 5'- aCCGAGUccgugucucuGUACuGUgguguagcgGCAUGCCGAUGaCCa -3' miRNA: 3'- -GGCUCA----------UAUG-CG---------UGUGCGGCUACaGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 117268 | 0.69 | 0.961951 |
Target: 5'- uCCGAGggacuCGUGCGCGCCGAcacgggcgaagaUG-CCa -3' miRNA: 3'- -GGCUCauau-GCGUGUGCGGCU------------ACaGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 127990 | 0.69 | 0.961951 |
Target: 5'- -aGAGUuaGCGUACACGUCGcUGUUg -3' miRNA: 3'- ggCUCAuaUGCGUGUGCGGCuACAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 84865 | 0.7 | 0.954526 |
Target: 5'- cCCGcuccgGUACGCGCgGCGCCGGcagGUCUc -3' miRNA: 3'- -GGCuca--UAUGCGUG-UGCGGCUa--CAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 45988 | 0.7 | 0.950469 |
Target: 5'- cCUGAGUAUACGC-CAgGCgGcaguAUGUUCg -3' miRNA: 3'- -GGCUCAUAUGCGuGUgCGgC----UACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 21254 | 0.75 | 0.755751 |
Target: 5'- cUCGAGUGUGCGCGC-CGCggaGGUGguaacgCCa -3' miRNA: 3'- -GGCUCAUAUGCGUGuGCGg--CUACa-----GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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