Results 41 - 60 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24723 | 3' | -51.4 | NC_005264.1 | + | 149248 | 0.67 | 0.98679 |
Target: 5'- gCCG-GUGUgGCGCugGgGCCGAaGcCCu -3' miRNA: 3'- -GGCuCAUA-UGCGugUgCGGCUaCaGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 144420 | 0.67 | 0.991431 |
Target: 5'- gCCGAGcgAgaggGCGCGCcuGCGCCGGccggaacgguggucgUuGUCCg -3' miRNA: 3'- -GGCUCa-Ua---UGCGUG--UGCGGCU---------------A-CAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 5623 | 0.67 | 0.992096 |
Target: 5'- aUCGGGc---CGCGCgACGCUaGGUGUCCc -3' miRNA: 3'- -GGCUCauauGCGUG-UGCGG-CUACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 16575 | 0.71 | 0.929797 |
Target: 5'- gCCGGGgcggcgGCGCACAUgacuccgGCCGAcccagaacauugugUGUCCu -3' miRNA: 3'- -GGCUCaua---UGCGUGUG-------CGGCU--------------ACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 27929 | 0.71 | 0.931869 |
Target: 5'- aCCGcGGUGUugGCguucuGCGCGUCGGUgGUCg -3' miRNA: 3'- -GGC-UCAUAugCG-----UGUGCGGCUA-CAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 48338 | 0.71 | 0.93688 |
Target: 5'- cCUGGGgaGUugGCGCACGCC-AUGgcggCCu -3' miRNA: 3'- -GGCUCa-UAugCGUGUGCGGcUACa---GG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 60523 | 0.71 | 0.93688 |
Target: 5'- gUGAGUAaccUACGCAUGCcgGCCGAggUGUCg -3' miRNA: 3'- gGCUCAU---AUGCGUGUG--CGGCU--ACAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 63352 | 0.7 | 0.941648 |
Target: 5'- aCGAGUGUguccGCGUACGCGauucUGUCCa -3' miRNA: 3'- gGCUCAUA----UGCGUGUGCggcuACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 112036 | 0.7 | 0.946177 |
Target: 5'- ------cUGCGCGCGCGCCGA--UCCg -3' miRNA: 3'- ggcucauAUGCGUGUGCGGCUacAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 7152 | 0.7 | 0.950469 |
Target: 5'- cCUGAGgcUACGC-CcUGCCGAguacaccccgcUGUCCa -3' miRNA: 3'- -GGCUCauAUGCGuGuGCGGCU-----------ACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 84150 | 0.72 | 0.890035 |
Target: 5'- cCCGGGaagugGUcgcaGCGCGCGCGCCGGaccUGUUUa -3' miRNA: 3'- -GGCUCa----UA----UGCGUGUGCGGCU---ACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 30130 | 0.72 | 0.883114 |
Target: 5'- aCCGAGcugcgGCGCAUugGCCGAgaaacacaacUCCa -3' miRNA: 3'- -GGCUCaua--UGCGUGugCGGCUac--------AGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 158295 | 0.73 | 0.868598 |
Target: 5'- cCCGAGacUugGCGCgACGCCGAaGaCCa -3' miRNA: 3'- -GGCUCauAugCGUG-UGCGGCUaCaGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 58369 | 0.73 | 0.868598 |
Target: 5'- gCGGGgccgGCGCGauauGCGCCGGauUGUCCa -3' miRNA: 3'- gGCUCaua-UGCGUg---UGCGGCU--ACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 83775 | 0.73 | 0.861014 |
Target: 5'- gUGAGUAUAaccucguaGUACACGCCGuaguUGUCa -3' miRNA: 3'- gGCUCAUAUg-------CGUGUGCGGCu---ACAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 150987 | 0.74 | 0.828644 |
Target: 5'- gCGAGUGgcgGCG-ACGgGCCGcGUGUCCg -3' miRNA: 3'- gGCUCAUa--UGCgUGUgCGGC-UACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 14058 | 0.74 | 0.811341 |
Target: 5'- gCCGGGUGggaACGUGCACGCCaGAcuUCCc -3' miRNA: 3'- -GGCUCAUa--UGCGUGUGCGG-CUacAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 16491 | 0.75 | 0.76248 |
Target: 5'- aCGAGUcacaugcgucauucgGCGCGCACGCCGAgaGUCa -3' miRNA: 3'- gGCUCAua-------------UGCGUGUGCGGCUa-CAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 148303 | 0.76 | 0.696175 |
Target: 5'- aCCGcGc--GCGUGCGCGCCGGUGUUCg -3' miRNA: 3'- -GGCuCauaUGCGUGUGCGGCUACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 61457 | 0.66 | 0.996185 |
Target: 5'- gCCGAGUugcucgaGCGCcguucguucuaGCGCGCCGAcGcgCCc -3' miRNA: 3'- -GGCUCAua-----UGCG-----------UGUGCGGCUaCa-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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