miRNA display CGI


Results 81 - 96 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24723 3' -51.4 NC_005264.1 + 16491 0.75 0.76248
Target:  5'- aCGAGUcacaugcgucauucgGCGCGCACGCCGAgaGUCa -3'
miRNA:   3'- gGCUCAua-------------UGCGUGUGCGGCUa-CAGg -5'
24723 3' -51.4 NC_005264.1 + 148303 0.76 0.696175
Target:  5'- aCCGcGc--GCGUGCGCGCCGGUGUUCg -3'
miRNA:   3'- -GGCuCauaUGCGUGUGCGGCUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 48338 0.71 0.93688
Target:  5'- cCUGGGgaGUugGCGCACGCC-AUGgcggCCu -3'
miRNA:   3'- -GGCUCa-UAugCGUGUGCGGcUACa---GG- -5'
24723 3' -51.4 NC_005264.1 + 60523 0.71 0.93688
Target:  5'- gUGAGUAaccUACGCAUGCcgGCCGAggUGUCg -3'
miRNA:   3'- gGCUCAU---AUGCGUGUG--CGGCU--ACAGg -5'
24723 3' -51.4 NC_005264.1 + 56801 0.68 0.979095
Target:  5'- -gGAG---GCGCAU-CGCCGGUGUCg -3'
miRNA:   3'- ggCUCauaUGCGUGuGCGGCUACAGg -5'
24723 3' -51.4 NC_005264.1 + 123816 0.68 0.976735
Target:  5'- aCUGGGUcGUugGCGaACGCCcugGUCCa -3'
miRNA:   3'- -GGCUCA-UAugCGUgUGCGGcuaCAGG- -5'
24723 3' -51.4 NC_005264.1 + 40416 0.69 0.97144
Target:  5'- aCGcGUA-ACGCACucgccuuuccCGUCGAUGUCCu -3'
miRNA:   3'- gGCuCAUaUGCGUGu---------GCGGCUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 9124 0.69 0.97144
Target:  5'- gCCGAGUAgguaguaACGCaACAcCGCCaccagaGAUGUCUc -3'
miRNA:   3'- -GGCUCAUa------UGCG-UGU-GCGG------CUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 8232 0.69 0.967563
Target:  5'- uCCGAGUAcgccaGCGCgguuagucuggccaGCgGCGCCcuGGUGUCCg -3'
miRNA:   3'- -GGCUCAUa----UGCG--------------UG-UGCGG--CUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 75240 0.69 0.961951
Target:  5'- gCCGucuuGUAUaACGCgaccACGCGCCG-UGUUCg -3'
miRNA:   3'- -GGCu---CAUA-UGCG----UGUGCGGCuACAGG- -5'
24723 3' -51.4 NC_005264.1 + 143290 0.69 0.961951
Target:  5'- aCCGAGgaagaGCAC-CGCCGAaucGUCUa -3'
miRNA:   3'- -GGCUCauaugCGUGuGCGGCUa--CAGG- -5'
24723 3' -51.4 NC_005264.1 + 82325 0.7 0.950469
Target:  5'- aCGAcGU-UGCGCAcCGCGgCGAUGUUCu -3'
miRNA:   3'- gGCU-CAuAUGCGU-GUGCgGCUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 7152 0.7 0.950469
Target:  5'- cCUGAGgcUACGC-CcUGCCGAguacaccccgcUGUCCa -3'
miRNA:   3'- -GGCUCauAUGCGuGuGCGGCU-----------ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 112036 0.7 0.946177
Target:  5'- ------cUGCGCGCGCGCCGA--UCCg -3'
miRNA:   3'- ggcucauAUGCGUGUGCGGCUacAGG- -5'
24723 3' -51.4 NC_005264.1 + 63352 0.7 0.941648
Target:  5'- aCGAGUGUguccGCGUACGCGauucUGUCCa -3'
miRNA:   3'- gGCUCAUA----UGCGUGUGCggcuACAGG- -5'
24723 3' -51.4 NC_005264.1 + 135837 1.15 0.004241
Target:  5'- gCCGAGUAUACGCACACGCCGAUGUCCg -3'
miRNA:   3'- -GGCUCAUAUGCGUGUGCGGCUACAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.