miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24723 5' -58.3 NC_005264.1 + 145929 0.75 0.347647
Target:  5'- -gGGUCAGcgcGgGCAUGGGCCUCaccgacgaCGGCg -3'
miRNA:   3'- gaCUAGUC---UgCGUACCCGGAGg-------GCCG- -5'
24723 5' -58.3 NC_005264.1 + 31786 0.66 0.828387
Target:  5'- ---cUCGGACGCAUucGGGUcguCUCUgGGCu -3'
miRNA:   3'- gacuAGUCUGCGUA--CCCG---GAGGgCCG- -5'
24723 5' -58.3 NC_005264.1 + 120160 0.66 0.852317
Target:  5'- uCUGAcggaCGGGCGCAcGGGaCgaUCCGGCc -3'
miRNA:   3'- -GACUa---GUCUGCGUaCCC-GgaGGGCCG- -5'
24723 5' -58.3 NC_005264.1 + 120004 0.66 0.852317
Target:  5'- cCUG---GGGCgGCAggUGGGCCUCCCcccucgcggaccGGCg -3'
miRNA:   3'- -GACuagUCUG-CGU--ACCCGGAGGG------------CCG- -5'
24723 5' -58.3 NC_005264.1 + 15485 0.73 0.447025
Target:  5'- -cGAUCGcGGCggGCAUGGGCCUggCCUGGUu -3'
miRNA:   3'- gaCUAGU-CUG--CGUACCCGGA--GGGCCG- -5'
24723 5' -58.3 NC_005264.1 + 136357 0.72 0.521352
Target:  5'- ----aCGGGCGC-UGGGCgCUgCCGGCg -3'
miRNA:   3'- gacuaGUCUGCGuACCCG-GAgGGCCG- -5'
24723 5' -58.3 NC_005264.1 + 64652 0.7 0.617016
Target:  5'- -cGAUCuGGGCGUauGucguuuaggggguuUGGGCCUgCCGGCg -3'
miRNA:   3'- gaCUAG-UCUGCG--U--------------ACCCGGAgGGCCG- -5'
24723 5' -58.3 NC_005264.1 + 123746 0.7 0.630047
Target:  5'- gCUGGUCAGACGCcgcUGcccGCCgagCCGGCg -3'
miRNA:   3'- -GACUAGUCUGCGu--ACc--CGGag-GGCCG- -5'
24723 5' -58.3 NC_005264.1 + 135872 1.12 0.001251
Target:  5'- gCUGAUCAGACGCAUGGGCCUCCCGGCg -3'
miRNA:   3'- -GACUAGUCUGCGUACCCGGAGGGCCG- -5'
24723 5' -58.3 NC_005264.1 + 21948 0.67 0.776113
Target:  5'- -cGAcUCGGGCGCAaaaGGCCagcugucauuUCCUGGCa -3'
miRNA:   3'- gaCU-AGUCUGCGUac-CCGG----------AGGGCCG- -5'
24723 5' -58.3 NC_005264.1 + 99034 0.68 0.737728
Target:  5'- -cGAUCuaGCGCAaagcgGGGCCUCCCccgagucGGUg -3'
miRNA:   3'- gaCUAGucUGCGUa----CCCGGAGGG-------CCG- -5'
24723 5' -58.3 NC_005264.1 + 67799 0.68 0.729083
Target:  5'- -----aAGuACGCGUGGGCCUCgaCGGUc -3'
miRNA:   3'- gacuagUC-UGCGUACCCGGAGg-GCCG- -5'
24723 5' -58.3 NC_005264.1 + 157074 0.75 0.347647
Target:  5'- -cGA-CGGuCGCGUGGGUCUCCCaGCu -3'
miRNA:   3'- gaCUaGUCuGCGUACCCGGAGGGcCG- -5'
24723 5' -58.3 NC_005264.1 + 85919 0.68 0.738684
Target:  5'- gCUGAcUCuGAcCGCGucUGaGGCCaccgUCCCGGCa -3'
miRNA:   3'- -GACU-AGuCU-GCGU--AC-CCGG----AGGGCCG- -5'
24723 5' -58.3 NC_005264.1 + 28021 0.74 0.395325
Target:  5'- -cGGUCGGGgGCggGaGGUCUUCCGGCg -3'
miRNA:   3'- gaCUAGUCUgCGuaC-CCGGAGGGCCG- -5'
24723 5' -58.3 NC_005264.1 + 122447 0.68 0.709647
Target:  5'- -gGGagGGACGUA-GGGCCgcgCCCGcGCu -3'
miRNA:   3'- gaCUagUCUGCGUaCCCGGa--GGGC-CG- -5'
24723 5' -58.3 NC_005264.1 + 79707 0.68 0.748197
Target:  5'- aUGAgggCAGACGC----GCCUCCgCGGCc -3'
miRNA:   3'- gACUa--GUCUGCGuaccCGGAGG-GCCG- -5'
24723 5' -58.3 NC_005264.1 + 136434 0.66 0.852317
Target:  5'- uCUGAggCGGAagaGCAUGGGCgcugaggccgcgCUCagagaCGGCg -3'
miRNA:   3'- -GACUa-GUCUg--CGUACCCG------------GAGg----GCCG- -5'
24723 5' -58.3 NC_005264.1 + 55154 0.73 0.438146
Target:  5'- gCUGGcgCAG-CGUAUGcGGCCUCUgGGCg -3'
miRNA:   3'- -GACUa-GUCuGCGUAC-CCGGAGGgCCG- -5'
24723 5' -58.3 NC_005264.1 + 98006 0.7 0.594017
Target:  5'- -gGAUcCAGuACGCAUGGugcuggccgacuucaGCCUCgCGGCa -3'
miRNA:   3'- gaCUA-GUC-UGCGUACC---------------CGGAGgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.