Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24724 | 3' | -52.8 | NC_005264.1 | + | 138383 | 0.69 | 0.892055 |
Target: 5'- ---uCCGCCGCGgaacaagccaGUCGCUAugGGc -3' miRNA: 3'- cuauGGCGGCGCaa--------CAGCGAUugCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 109885 | 0.7 | 0.88509 |
Target: 5'- --cACCGCCGCGUaGaggCGCUGcaucgGCGAg -3' miRNA: 3'- cuaUGGCGGCGCAaCa--GCGAU-----UGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 87997 | 0.7 | 0.877891 |
Target: 5'- aGUGCCGCCGCuacgagaUGUCGCgUAugGGa -3' miRNA: 3'- cUAUGGCGGCGca-----ACAGCG-AUugCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 19875 | 0.7 | 0.862808 |
Target: 5'- cGAgagACCGCCGCGgccgCGCUAGCc-- -3' miRNA: 3'- -CUa--UGGCGGCGCaacaGCGAUUGcua -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 90997 | 0.7 | 0.862808 |
Target: 5'- --cGCCGCCGCGaacgcGUCGUUAuucGCGAc -3' miRNA: 3'- cuaUGGCGGCGCaa---CAGCGAU---UGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 135000 | 0.71 | 0.821409 |
Target: 5'- gGAUGCCGCCGCGacaGUgGC--GCGAUc -3' miRNA: 3'- -CUAUGGCGGCGCaa-CAgCGauUGCUA- -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 6435 | 0.71 | 0.821409 |
Target: 5'- ---cUCGCgGCGgcGUCGCUGGCGGa -3' miRNA: 3'- cuauGGCGgCGCaaCAGCGAUUGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 125462 | 0.71 | 0.821409 |
Target: 5'- ---cUCGCgGCGgcGUCGCUGGCGGa -3' miRNA: 3'- cuauGGCGgCGCaaCAGCGAUUGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 3607 | 0.73 | 0.746292 |
Target: 5'- -uUACCGCCGCGggGggcCGCgagGGCGGg -3' miRNA: 3'- cuAUGGCGGCGCaaCa--GCGa--UUGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 122634 | 0.73 | 0.746292 |
Target: 5'- -uUACCGCCGCGggGggcCGCgagGGCGGg -3' miRNA: 3'- cuAUGGCGGCGCaaCa--GCGa--UUGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 71825 | 0.74 | 0.664469 |
Target: 5'- --aGCCGcCCGCGggGUCGCgaaUAACGAc -3' miRNA: 3'- cuaUGGC-GGCGCaaCAGCG---AUUGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 104977 | 0.76 | 0.58083 |
Target: 5'- cGGUGCCGCCGUcucUGgCGCUGACGAc -3' miRNA: 3'- -CUAUGGCGGCGca-ACaGCGAUUGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 158243 | 0.76 | 0.549886 |
Target: 5'- --cGCCGCCGCGg---CGCUGGCGGg -3' miRNA: 3'- cuaUGGCGGCGCaacaGCGAUUGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 39216 | 0.76 | 0.549886 |
Target: 5'- --cGCCGCCGCGg---CGCUGGCGGg -3' miRNA: 3'- cuaUGGCGGCGCaacaGCGAUUGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 136082 | 1.06 | 0.008818 |
Target: 5'- gGAUACCGCCGCGUUGUCGCUAACGAUg -3' miRNA: 3'- -CUAUGGCGGCGCAACAGCGAUUGCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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