miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24724 5' -54.9 NC_005264.1 + 131598 0.71 0.734382
Target:  5'- uGugGAGggAGCGGCGCGcguGGGcGCGCGc -3'
miRNA:   3'- gCugCUUa-UUGCUGCGC---CCCuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 157692 0.71 0.781733
Target:  5'- gGACGAu--GCGGCGCGGcc-GCGCAu -3'
miRNA:   3'- gCUGCUuauUGCUGCGCCccuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 55549 0.71 0.781733
Target:  5'- gCGACGGaaGUAcUGGaGgGGGGAGCGCGg -3'
miRNA:   3'- -GCUGCU--UAUuGCUgCgCCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 151859 0.71 0.781733
Target:  5'- cCGGCGGc-GAC-ACGUGGGGGGCGUc -3'
miRNA:   3'- -GCUGCUuaUUGcUGCGCCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 42278 0.71 0.781733
Target:  5'- cCGGCGcGGUcAACGcCGCGGGGccccaaaaaacGGCGCAg -3'
miRNA:   3'- -GCUGC-UUA-UUGCuGCGCCCC-----------UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 122753 0.71 0.741169
Target:  5'- gCGACGAGgaaGACGACgaggaGCGGGGccucuugccgccggGGCGCu -3'
miRNA:   3'- -GCUGCUUa--UUGCUG-----CGCCCC--------------UCGCGu -5'
24724 5' -54.9 NC_005264.1 + 161305 0.71 0.781733
Target:  5'- cCGGCGcGGUcAACGcCGCGGGGccccaaaaaacGGCGCAg -3'
miRNA:   3'- -GCUGC-UUA-UUGCuGCGCCCC-----------UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 150986 0.71 0.753648
Target:  5'- -cGCGAGUGGCGGCGaCGGGccGCGUg -3'
miRNA:   3'- gcUGCUUAUUGCUGC-GCCCcuCGCGu -5'
24724 5' -54.9 NC_005264.1 + 125492 0.71 0.734382
Target:  5'- uCGGCGGcgcGGCGaACGuCGGGGuGCGCGg -3'
miRNA:   3'- -GCUGCUua-UUGC-UGC-GCCCCuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 145863 0.72 0.704849
Target:  5'- cCGGCGGAguuuGCGaACGgGGGuGGGUGCAa -3'
miRNA:   3'- -GCUGCUUau--UGC-UGCgCCC-CUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 74895 0.72 0.68886
Target:  5'- uCGACGAucguGCGAuuCGCguagaagccauuuacGGGGAGCGCGu -3'
miRNA:   3'- -GCUGCUuau-UGCU--GCG---------------CCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 35962 0.72 0.724613
Target:  5'- cCGACG-AUGGCGAuuCGCcuggaGGGGGCGCGg -3'
miRNA:   3'- -GCUGCuUAUUGCU--GCGc----CCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 25946 0.72 0.704849
Target:  5'- gCGACGAAgaugagGACGGCGCGGacGuGUGCAc -3'
miRNA:   3'- -GCUGCUUa-----UUGCUGCGCCc-CuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 25618 0.72 0.684843
Target:  5'- aGACGAagAUGAUGACGCGGuuaagcuuaGGGGCGa- -3'
miRNA:   3'- gCUGCU--UAUUGCUGCGCC---------CCUCGCgu -5'
24724 5' -54.9 NC_005264.1 + 2881 0.73 0.674771
Target:  5'- uCGAcCGGGgcGCGGCgcgGCGGGGAGgGCGa -3'
miRNA:   3'- -GCU-GCUUauUGCUG---CGCCCCUCgCGU- -5'
24724 5' -54.9 NC_005264.1 + 40782 0.73 0.664664
Target:  5'- aGACGc--AGCGGCgcugcaaacuGCGGGGGGCGCu -3'
miRNA:   3'- gCUGCuuaUUGCUG----------CGCCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 41053 0.73 0.654532
Target:  5'- aGACGGu--ACGGCGCcgGGGGAcGCGCc -3'
miRNA:   3'- gCUGCUuauUGCUGCG--CCCCU-CGCGu -5'
24724 5' -54.9 NC_005264.1 + 96875 0.73 0.651489
Target:  5'- gGACGAGUAuugaagauggcaugGCGGCGCGcGaGGGCGCGg -3'
miRNA:   3'- gCUGCUUAU--------------UGCUGCGCcC-CUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 3167 0.73 0.624062
Target:  5'- aCGGCGAcccuccgcGUcgcGACGGCGCGGGGaAGgGCu -3'
miRNA:   3'- -GCUGCU--------UA---UUGCUGCGCCCC-UCgCGu -5'
24724 5' -54.9 NC_005264.1 + 121907 0.73 0.674771
Target:  5'- uCGAcCGGGgcGCGGCgcgGCGGGGAGgGCGa -3'
miRNA:   3'- -GCU-GCUUauUGCUG---CGCCCCUCgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.