miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24724 5' -54.9 NC_005264.1 + 145863 0.72 0.704849
Target:  5'- cCGGCGGAguuuGCGaACGgGGGuGGGUGCAa -3'
miRNA:   3'- -GCUGCUUau--UGC-UGCgCCC-CUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 35962 0.72 0.724613
Target:  5'- cCGACG-AUGGCGAuuCGCcuggaGGGGGCGCGg -3'
miRNA:   3'- -GCUGCuUAUUGCU--GCGc----CCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 122753 0.71 0.741169
Target:  5'- gCGACGAGgaaGACGACgaggaGCGGGGccucuugccgccggGGCGCu -3'
miRNA:   3'- -GCUGCUUa--UUGCUG-----CGCCCC--------------UCGCGu -5'
24724 5' -54.9 NC_005264.1 + 150986 0.71 0.753648
Target:  5'- -cGCGAGUGGCGGCGaCGGGccGCGUg -3'
miRNA:   3'- gcUGCUUAUUGCUGC-GCCCcuCGCGu -5'
24724 5' -54.9 NC_005264.1 + 55549 0.71 0.781733
Target:  5'- gCGACGGaaGUAcUGGaGgGGGGAGCGCGg -3'
miRNA:   3'- -GCUGCU--UAUuGCUgCgCCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 161305 0.71 0.781733
Target:  5'- cCGGCGcGGUcAACGcCGCGGGGccccaaaaaacGGCGCAg -3'
miRNA:   3'- -GCUGC-UUA-UUGCuGCGCCCC-----------UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 125492 0.71 0.734382
Target:  5'- uCGGCGGcgcGGCGaACGuCGGGGuGCGCGg -3'
miRNA:   3'- -GCUGCUua-UUGC-UGC-GCCCCuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 42278 0.71 0.781733
Target:  5'- cCGGCGcGGUcAACGcCGCGGGGccccaaaaaacGGCGCAg -3'
miRNA:   3'- -GCUGC-UUA-UUGCuGCGCCCC-----------UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 131598 0.71 0.734382
Target:  5'- uGugGAGggAGCGGCGCGcguGGGcGCGCGc -3'
miRNA:   3'- gCugCUUa-UUGCUGCGC---CCCuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 151859 0.71 0.781733
Target:  5'- cCGGCGGc-GAC-ACGUGGGGGGCGUc -3'
miRNA:   3'- -GCUGCUuaUUGcUGCGCCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 157692 0.71 0.781733
Target:  5'- gGACGAu--GCGGCGCGGcc-GCGCAu -3'
miRNA:   3'- gCUGCUuauUGCUGCGCCccuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 31959 0.71 0.753648
Target:  5'- -cGCGAGUGGCGGCGaCGGGccGCGUg -3'
miRNA:   3'- gcUGCUUAUUGCUGC-GCCCcuCGCGu -5'
24724 5' -54.9 NC_005264.1 + 6465 0.71 0.734382
Target:  5'- uCGGCGGcgcGGCGaACGuCGGGGuGCGCGg -3'
miRNA:   3'- -GCUGCUua-UUGC-UGC-GCCCCuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 44121 0.7 0.825783
Target:  5'- gGGCgGGAUAGCGGCGauuacgaGcGGGAGgGCAg -3'
miRNA:   3'- gCUG-CUUAUUGCUGCg------C-CCCUCgCGU- -5'
24724 5' -54.9 NC_005264.1 + 75063 0.7 0.825783
Target:  5'- uCGGCgGAGUAGCuGACGCGGaGAG-GCAg -3'
miRNA:   3'- -GCUG-CUUAUUG-CUGCGCCcCUCgCGU- -5'
24724 5' -54.9 NC_005264.1 + 156185 0.7 0.825783
Target:  5'- gCGGCG--UGGCGGCGcCGGcuauaugucGGGGCGCAg -3'
miRNA:   3'- -GCUGCuuAUUGCUGC-GCC---------CCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 130847 0.7 0.824098
Target:  5'- uCGGCGcAUAACGGagcgaagcaggaGCGGGGAGCa-- -3'
miRNA:   3'- -GCUGCuUAUUGCUg-----------CGCCCCUCGcgu -5'
24724 5' -54.9 NC_005264.1 + 43680 0.7 0.817289
Target:  5'- cCGGCGuuaaGGCGGcCGcCGGGGAGCGgGa -3'
miRNA:   3'- -GCUGCuua-UUGCU-GC-GCCCCUCGCgU- -5'
24724 5' -54.9 NC_005264.1 + 39387 0.7 0.81643
Target:  5'- aGACG-AUGACGACGUcggcgaaGGGGGcacuGCGCu -3'
miRNA:   3'- gCUGCuUAUUGCUGCG-------CCCCU----CGCGu -5'
24724 5' -54.9 NC_005264.1 + 43874 0.7 0.808628
Target:  5'- aGACGGA--ACGAgCGCGgcaaaGGGGGCGCc -3'
miRNA:   3'- gCUGCUUauUGCU-GCGC-----CCCUCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.