Results 61 - 80 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 99150 | 0.69 | 0.842245 |
Target: 5'- gGACGAGaucGACGAcauCGCGGGGgacgucacucgcGGCGUAg -3' miRNA: 3'- gCUGCUUa--UUGCU---GCGCCCC------------UCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 155247 | 0.69 | 0.847039 |
Target: 5'- gGAUGAGgaagcaucuccgcAGCGGCGCGGGGuaGGCgGCGg -3' miRNA: 3'- gCUGCUUa------------UUGCUGCGCCCC--UCG-CGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 99999 | 0.69 | 0.84941 |
Target: 5'- gCGACGAAacGCGACGCGGaaauaaagaaGGccgcggcGGCGCu -3' miRNA: 3'- -GCUGCUUauUGCUGCGCC----------CC-------UCGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 43146 | 0.69 | 0.857953 |
Target: 5'- aGcACGggUGgaGCGGggaGgGGGGGGCGCGu -3' miRNA: 3'- gC-UGCuuAU--UGCUg--CgCCCCUCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 63783 | 0.69 | 0.857953 |
Target: 5'- uCGACGGAUAAcacCGACuCGGGGGaggccccgcuuuGCGCu -3' miRNA: 3'- -GCUGCUUAUU---GCUGcGCCCCU------------CGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 154906 | 0.69 | 0.857953 |
Target: 5'- gCGGCcgugGACGACGCGuGGAcGCGCGc -3' miRNA: 3'- -GCUGcuuaUUGCUGCGCcCCU-CGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 158970 | 0.69 | 0.872133 |
Target: 5'- aGACGGA----GACGUGGGGcagcccaauccccGGCGCAg -3' miRNA: 3'- gCUGCUUauugCUGCGCCCC-------------UCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 122408 | 0.68 | 0.879994 |
Target: 5'- gCGGCGAGggcuucucCGgaACGCGGGGucgguGCGCGg -3' miRNA: 3'- -GCUGCUUauu-----GC--UGCGCCCCu----CGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 13964 | 0.68 | 0.879994 |
Target: 5'- gCGACGAGgagacgAGCGAgaCGCGGGGu-CGCc -3' miRNA: 3'- -GCUGCUUa-----UUGCU--GCGCCCCucGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 153272 | 0.68 | 0.879994 |
Target: 5'- aGACGAacccggcuucuGUAGCGagGCGCGGGcGAcGCGUc -3' miRNA: 3'- gCUGCU-----------UAUUGC--UGCGCCC-CU-CGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 34245 | 0.68 | 0.879994 |
Target: 5'- aGACGAacccggcuucuGUAGCGagGCGCGGGcGAcGCGUc -3' miRNA: 3'- gCUGCU-----------UAUUGC--UGCGCCC-CU-CGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 3381 | 0.68 | 0.879994 |
Target: 5'- gCGGCGAGggcuucucCGgaACGCGGGGucgguGCGCGg -3' miRNA: 3'- -GCUGCUUauu-----GC--UGCGCCCCu----CGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 117829 | 0.68 | 0.879994 |
Target: 5'- aCGGguuCGAGgggaGGCGCGGcGGAGUGCGc -3' miRNA: 3'- -GCU---GCUUauugCUGCGCC-CCUCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 100083 | 0.68 | 0.886913 |
Target: 5'- gGGCGuagcAUGGCGGcCGCGGGGcucAGCGaCGa -3' miRNA: 3'- gCUGCu---UAUUGCU-GCGCCCC---UCGC-GU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 81656 | 0.68 | 0.900081 |
Target: 5'- uGAgGAGUuacgGACGGCgGCGGGGAGUc-- -3' miRNA: 3'- gCUgCUUA----UUGCUG-CGCCCCUCGcgu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 47563 | 0.68 | 0.904475 |
Target: 5'- uGACGAaggccucgugccagAUAugGcuCGCGGGGAcGCGUu -3' miRNA: 3'- gCUGCU--------------UAUugCu-GCGCCCCU-CGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 45641 | 0.68 | 0.906323 |
Target: 5'- aGAUaacUGACGACGCGGcGGcuaggcgccaAGCGCAg -3' miRNA: 3'- gCUGcuuAUUGCUGCGCC-CC----------UCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 115246 | 0.68 | 0.906323 |
Target: 5'- gGGCGuGUcaAAUGGCcuGCGGGGAGUGUc -3' miRNA: 3'- gCUGCuUA--UUGCUG--CGCCCCUCGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 108428 | 0.68 | 0.886913 |
Target: 5'- -cGCGAacucGUAGCG-CGUGGGGAGauuaGCGg -3' miRNA: 3'- gcUGCU----UAUUGCuGCGCCCCUCg---CGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 45150 | 0.68 | 0.89361 |
Target: 5'- aGGCGcc--ACGACGCGGaGGcaggagAGCGCGg -3' miRNA: 3'- gCUGCuuauUGCUGCGCC-CC------UCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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