miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24724 5' -54.9 NC_005264.1 + 3728 0.7 0.823253
Target:  5'- gGACGAGgaaGACGACgaggaGCGGGGccucuugccgccggGGCGCu -3'
miRNA:   3'- gCUGCUUa--UUGCUG-----CGCCCC--------------UCGCGu -5'
24724 5' -54.9 NC_005264.1 + 130847 0.7 0.824098
Target:  5'- uCGGCGcAUAACGGagcgaagcaggaGCGGGGAGCa-- -3'
miRNA:   3'- -GCUGCuUAUUGCUg-----------CGCCCCUCGcgu -5'
24724 5' -54.9 NC_005264.1 + 44121 0.7 0.825783
Target:  5'- gGGCgGGAUAGCGGCGauuacgaGcGGGAGgGCAg -3'
miRNA:   3'- gCUG-CUUAUUGCUGCg------C-CCCUCgCGU- -5'
24724 5' -54.9 NC_005264.1 + 156185 0.7 0.825783
Target:  5'- gCGGCG--UGGCGGCGcCGGcuauaugucGGGGCGCAg -3'
miRNA:   3'- -GCUGCuuAUUGCUGC-GCC---------CCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 75063 0.7 0.825783
Target:  5'- uCGGCgGAGUAGCuGACGCGGaGAG-GCAg -3'
miRNA:   3'- -GCUG-CUUAUUG-CUGCGCCcCUCgCGU- -5'
24724 5' -54.9 NC_005264.1 + 121526 0.69 0.834105
Target:  5'- uCGGCGGGccucGCGcgacuucaGCGCGGGGGGCGa- -3'
miRNA:   3'- -GCUGCUUau--UGC--------UGCGCCCCUCGCgu -5'
24724 5' -54.9 NC_005264.1 + 2499 0.69 0.834105
Target:  5'- uCGGCGGGccucGCGcgacuucaGCGCGGGGGGCGa- -3'
miRNA:   3'- -GCUGCUUau--UGC--------UGCGCCCCUCGCgu -5'
24724 5' -54.9 NC_005264.1 + 108146 0.69 0.834105
Target:  5'- uCGGgGGGccguCGAgccuCGCGGGGAGCGUAa -3'
miRNA:   3'- -GCUgCUUauu-GCU----GCGCCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 142763 0.69 0.841439
Target:  5'- gGACGAGcUGACGgugcuugcucgcuACGCGGGGccGCGUg -3'
miRNA:   3'- gCUGCUU-AUUGC-------------UGCGCCCCu-CGCGu -5'
24724 5' -54.9 NC_005264.1 + 124295 0.69 0.842245
Target:  5'- aGGCGAGUcGCGGCcggacgGCGGGGcGGCGg- -3'
miRNA:   3'- gCUGCUUAuUGCUG------CGCCCC-UCGCgu -5'
24724 5' -54.9 NC_005264.1 + 99150 0.69 0.842245
Target:  5'- gGACGAGaucGACGAcauCGCGGGGgacgucacucgcGGCGUAg -3'
miRNA:   3'- gCUGCUUa--UUGCU---GCGCCCC------------UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 5268 0.69 0.842245
Target:  5'- aGGCGAGUcGCGGCcggacgGCGGGGcGGCGg- -3'
miRNA:   3'- gCUGCUUAuUGCUG------CGCCCC-UCGCgu -5'
24724 5' -54.9 NC_005264.1 + 155247 0.69 0.847039
Target:  5'- gGAUGAGgaagcaucuccgcAGCGGCGCGGGGuaGGCgGCGg -3'
miRNA:   3'- gCUGCUUa------------UUGCUGCGCCCC--UCG-CGU- -5'
24724 5' -54.9 NC_005264.1 + 99999 0.69 0.84941
Target:  5'- gCGACGAAacGCGACGCGGaaauaaagaaGGccgcggcGGCGCu -3'
miRNA:   3'- -GCUGCUUauUGCUGCGCC----------CC-------UCGCGu -5'
24724 5' -54.9 NC_005264.1 + 143873 0.69 0.857953
Target:  5'- aGACucuAUAAguCGGCGCGGcGGGCGCAa -3'
miRNA:   3'- gCUGcu-UAUU--GCUGCGCCcCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 19427 0.69 0.857953
Target:  5'- gCGcCGggUGugGcCGCGGGGcGCGgGu -3'
miRNA:   3'- -GCuGCuuAUugCuGCGCCCCuCGCgU- -5'
24724 5' -54.9 NC_005264.1 + 162173 0.69 0.857953
Target:  5'- aGcACGggUGgaGCGGggaGgGGGGGGCGCGu -3'
miRNA:   3'- gC-UGCuuAU--UGCUg--CgCCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 154906 0.69 0.857953
Target:  5'- gCGGCcgugGACGACGCGuGGAcGCGCGc -3'
miRNA:   3'- -GCUGcuuaUUGCUGCGCcCCU-CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 63783 0.69 0.857953
Target:  5'- uCGACGGAUAAcacCGACuCGGGGGaggccccgcuuuGCGCu -3'
miRNA:   3'- -GCUGCUUAUU---GCUGcGCCCCU------------CGCGu -5'
24724 5' -54.9 NC_005264.1 + 43146 0.69 0.857953
Target:  5'- aGcACGggUGgaGCGGggaGgGGGGGGCGCGu -3'
miRNA:   3'- gC-UGCuuAU--UGCUg--CgCCCCUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.