miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24724 5' -54.9 NC_005264.1 + 43146 0.69 0.857953
Target:  5'- aGcACGggUGgaGCGGggaGgGGGGGGCGCGu -3'
miRNA:   3'- gC-UGCuuAU--UGCUg--CgCCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 27704 0.69 0.865509
Target:  5'- uGACGAcgGAUGuCGCGGGGcauaauucGGCGa- -3'
miRNA:   3'- gCUGCUuaUUGCuGCGCCCC--------UCGCgu -5'
24724 5' -54.9 NC_005264.1 + 158970 0.69 0.872133
Target:  5'- aGACGGA----GACGUGGGGcagcccaauccccGGCGCAg -3'
miRNA:   3'- gCUGCUUauugCUGCGCCCC-------------UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 22754 0.69 0.872858
Target:  5'- gGGCGAagcgAUAGCGGCGgGcaaugaGGGGCGCGg -3'
miRNA:   3'- gCUGCU----UAUUGCUGCgCc-----CCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 122626 0.69 0.872858
Target:  5'- gCGAaGAAUuacCGcCGCGGGGGGcCGCGa -3'
miRNA:   3'- -GCUgCUUAuu-GCuGCGCCCCUC-GCGU- -5'
24724 5' -54.9 NC_005264.1 + 3599 0.69 0.872858
Target:  5'- gCGAaGAAUuacCGcCGCGGGGGGcCGCGa -3'
miRNA:   3'- -GCUgCUUAuu-GCuGCGCCCCUC-GCGU- -5'
24724 5' -54.9 NC_005264.1 + 114653 0.69 0.872858
Target:  5'- aGACGGccGUAGCGucuccaugaaGCGGGG-GUGCAg -3'
miRNA:   3'- gCUGCU--UAUUGCug--------CGCCCCuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 3381 0.68 0.879994
Target:  5'- gCGGCGAGggcuucucCGgaACGCGGGGucgguGCGCGg -3'
miRNA:   3'- -GCUGCUUauu-----GC--UGCGCCCCu----CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 34245 0.68 0.879994
Target:  5'- aGACGAacccggcuucuGUAGCGagGCGCGGGcGAcGCGUc -3'
miRNA:   3'- gCUGCU-----------UAUUGC--UGCGCCC-CU-CGCGu -5'
24724 5' -54.9 NC_005264.1 + 122408 0.68 0.879994
Target:  5'- gCGGCGAGggcuucucCGgaACGCGGGGucgguGCGCGg -3'
miRNA:   3'- -GCUGCUUauu-----GC--UGCGCCCCu----CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 13964 0.68 0.879994
Target:  5'- gCGACGAGgagacgAGCGAgaCGCGGGGu-CGCc -3'
miRNA:   3'- -GCUGCUUa-----UUGCU--GCGCCCCucGCGu -5'
24724 5' -54.9 NC_005264.1 + 153272 0.68 0.879994
Target:  5'- aGACGAacccggcuucuGUAGCGagGCGCGGGcGAcGCGUc -3'
miRNA:   3'- gCUGCU-----------UAUUGC--UGCGCCC-CU-CGCGu -5'
24724 5' -54.9 NC_005264.1 + 117829 0.68 0.879994
Target:  5'- aCGGguuCGAGgggaGGCGCGGcGGAGUGCGc -3'
miRNA:   3'- -GCU---GCUUauugCUGCGCC-CCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 108428 0.68 0.886913
Target:  5'- -cGCGAacucGUAGCG-CGUGGGGAGauuaGCGg -3'
miRNA:   3'- gcUGCU----UAUUGCuGCGCCCCUCg---CGU- -5'
24724 5' -54.9 NC_005264.1 + 100083 0.68 0.886913
Target:  5'- gGGCGuagcAUGGCGGcCGCGGGGcucAGCGaCGa -3'
miRNA:   3'- gCUGCu---UAUUGCU-GCGCCCC---UCGC-GU- -5'
24724 5' -54.9 NC_005264.1 + 45150 0.68 0.89361
Target:  5'- aGGCGcc--ACGACGCGGaGGcaggagAGCGCGg -3'
miRNA:   3'- gCUGCuuauUGCUGCGCC-CC------UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 81656 0.68 0.900081
Target:  5'- uGAgGAGUuacgGACGGCgGCGGGGAGUc-- -3'
miRNA:   3'- gCUgCUUA----UUGCUG-CGCCCCUCGcgu -5'
24724 5' -54.9 NC_005264.1 + 47563 0.68 0.904475
Target:  5'- uGACGAaggccucgugccagAUAugGcuCGCGGGGAcGCGUu -3'
miRNA:   3'- gCUGCU--------------UAUugCu-GCGCCCCU-CGCGu -5'
24724 5' -54.9 NC_005264.1 + 115246 0.68 0.906323
Target:  5'- gGGCGuGUcaAAUGGCcuGCGGGGAGUGUc -3'
miRNA:   3'- gCUGCuUA--UUGCUG--CGCCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 45641 0.68 0.906323
Target:  5'- aGAUaacUGACGACGCGGcGGcuaggcgccaAGCGCAg -3'
miRNA:   3'- gCUGcuuAUUGCUGCGCC-CC----------UCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.