miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24724 5' -54.9 NC_005264.1 + 100842 0.67 0.912334
Target:  5'- aCGGCGAGUucucccuCGACGCauGGGAccagGCGCGc -3'
miRNA:   3'- -GCUGCUUAuu-----GCUGCGc-CCCU----CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 143602 0.67 0.912334
Target:  5'- -aACGAG-AAUGGCGCGGGGuacAGCGa- -3'
miRNA:   3'- gcUGCUUaUUGCUGCGCCCC---UCGCgu -5'
24724 5' -54.9 NC_005264.1 + 67002 0.67 0.912334
Target:  5'- aCGGCGAGUgcugccugGACGGaGCGGcGGccuuGCGCAg -3'
miRNA:   3'- -GCUGCUUA--------UUGCUgCGCC-CCu---CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 71840 0.67 0.912334
Target:  5'- -cGCGAAUAACGACGCGucgcGGcGGCGg- -3'
miRNA:   3'- gcUGCUUAUUGCUGCGC----CCcUCGCgu -5'
24724 5' -54.9 NC_005264.1 + 3669 0.67 0.918112
Target:  5'- gGGCGAcUGGCauuGGUGCGGGGccuGGCGCGg -3'
miRNA:   3'- gCUGCUuAUUG---CUGCGCCCC---UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 66690 0.67 0.918112
Target:  5'- cCGGCGc----CGG-GCGGGGGGCGUAc -3'
miRNA:   3'- -GCUGCuuauuGCUgCGCCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 120742 0.67 0.923111
Target:  5'- cCGGCGAcu-GCGACGaCaGGGAuaucccgGCGCAg -3'
miRNA:   3'- -GCUGCUuauUGCUGC-GcCCCU-------CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 100612 0.67 0.923655
Target:  5'- cCGACGAccccgaAGCGGC-CGcGGAGCGCGc -3'
miRNA:   3'- -GCUGCUua----UUGCUGcGCcCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 6978 0.67 0.927394
Target:  5'- uGAUGAG-AGUGGCGCGGGGuugucccugcgggcGGCGCc -3'
miRNA:   3'- gCUGCUUaUUGCUGCGCCCC--------------UCGCGu -5'
24724 5' -54.9 NC_005264.1 + 150527 0.67 0.928962
Target:  5'- aCGAgGAAggucaGGCGGCuccaggcucggGCGGGGAGgGCc -3'
miRNA:   3'- -GCUgCUUa----UUGCUG-----------CGCCCCUCgCGu -5'
24724 5' -54.9 NC_005264.1 + 42380 0.67 0.928962
Target:  5'- gCGAucuuCGAGgcGACGugGCGGuGGAaauGCGCGa -3'
miRNA:   3'- -GCU----GCUUa-UUGCugCGCC-CCU---CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 151106 0.67 0.928962
Target:  5'- -uGCGAAag-UGACGUaGGGGGGCGCc -3'
miRNA:   3'- gcUGCUUauuGCUGCG-CCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 154792 0.67 0.928962
Target:  5'- gCGACGuggGUGAaGAgGCGGaGGGCGCGg -3'
miRNA:   3'- -GCUGCu--UAUUgCUgCGCCcCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 31500 0.67 0.928962
Target:  5'- aCGAgGAAggucaGGCGGCuccaggcucggGCGGGGAGgGCc -3'
miRNA:   3'- -GCUgCUUa----UUGCUG-----------CGCCCCUCgCGu -5'
24724 5' -54.9 NC_005264.1 + 20243 0.67 0.928962
Target:  5'- uGACGggUGggcagggguuGCGGCGCggccucgcggaGGGGAccgucuGCGCGc -3'
miRNA:   3'- gCUGCuuAU----------UGCUGCG-----------CCCCU------CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 32079 0.67 0.928962
Target:  5'- -uGCGAAag-UGACGUaGGGGGGCGCc -3'
miRNA:   3'- gcUGCUUauuGCUGCG-CCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 35766 0.67 0.928962
Target:  5'- gCGACGuggGUGAaGAgGCGGaGGGCGCGg -3'
miRNA:   3'- -GCUGCu--UAUUgCUgCGCCcCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 95446 0.67 0.934033
Target:  5'- uCGugGAAUAcgcuACcGCGCcGGcGGGCGCAg -3'
miRNA:   3'- -GCugCUUAU----UGcUGCGcCC-CUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 28042 0.67 0.934033
Target:  5'- cCGGCGcgc-GCGACGCcGGGuaaaAGCGCGc -3'
miRNA:   3'- -GCUGCuuauUGCUGCGcCCC----UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 133772 0.67 0.934033
Target:  5'- cCGACGAAgagcggcaGAUGACGauGGGGGC-CAa -3'
miRNA:   3'- -GCUGCUUa-------UUGCUGCgcCCCUCGcGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.