Results 61 - 80 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 5268 | 0.69 | 0.842245 |
Target: 5'- aGGCGAGUcGCGGCcggacgGCGGGGcGGCGg- -3' miRNA: 3'- gCUGCUUAuUGCUG------CGCCCC-UCGCgu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 99150 | 0.69 | 0.842245 |
Target: 5'- gGACGAGaucGACGAcauCGCGGGGgacgucacucgcGGCGUAg -3' miRNA: 3'- gCUGCUUa--UUGCU---GCGCCCC------------UCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 142763 | 0.69 | 0.841439 |
Target: 5'- gGACGAGcUGACGgugcuugcucgcuACGCGGGGccGCGUg -3' miRNA: 3'- gCUGCUU-AUUGC-------------UGCGCCCCu-CGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 121526 | 0.69 | 0.834105 |
Target: 5'- uCGGCGGGccucGCGcgacuucaGCGCGGGGGGCGa- -3' miRNA: 3'- -GCUGCUUau--UGC--------UGCGCCCCUCGCgu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 108146 | 0.69 | 0.834105 |
Target: 5'- uCGGgGGGccguCGAgccuCGCGGGGAGCGUAa -3' miRNA: 3'- -GCUgCUUauu-GCU----GCGCCCCUCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 2499 | 0.69 | 0.834105 |
Target: 5'- uCGGCGGGccucGCGcgacuucaGCGCGGGGGGCGa- -3' miRNA: 3'- -GCUGCUUau--UGC--------UGCGCCCCUCGCgu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 44121 | 0.7 | 0.825783 |
Target: 5'- gGGCgGGAUAGCGGCGauuacgaGcGGGAGgGCAg -3' miRNA: 3'- gCUG-CUUAUUGCUGCg------C-CCCUCgCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 156185 | 0.7 | 0.825783 |
Target: 5'- gCGGCG--UGGCGGCGcCGGcuauaugucGGGGCGCAg -3' miRNA: 3'- -GCUGCuuAUUGCUGC-GCC---------CCUCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 75063 | 0.7 | 0.825783 |
Target: 5'- uCGGCgGAGUAGCuGACGCGGaGAG-GCAg -3' miRNA: 3'- -GCUG-CUUAUUG-CUGCGCCcCUCgCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 130847 | 0.7 | 0.824098 |
Target: 5'- uCGGCGcAUAACGGagcgaagcaggaGCGGGGAGCa-- -3' miRNA: 3'- -GCUGCuUAUUGCUg-----------CGCCCCUCGcgu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 3728 | 0.7 | 0.823253 |
Target: 5'- gGACGAGgaaGACGACgaggaGCGGGGccucuugccgccggGGCGCu -3' miRNA: 3'- gCUGCUUa--UUGCUG-----CGCCCC--------------UCGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 162706 | 0.7 | 0.817289 |
Target: 5'- cCGGCGuuaaGGCGGcCGcCGGGGAGCGgGa -3' miRNA: 3'- -GCUGCuua-UUGCU-GC-GCCCCUCGCgU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 43680 | 0.7 | 0.817289 |
Target: 5'- cCGGCGuuaaGGCGGcCGcCGGGGAGCGgGa -3' miRNA: 3'- -GCUGCuua-UUGCU-GC-GCCCCUCGCgU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 158414 | 0.7 | 0.81643 |
Target: 5'- aGACG-AUGACGACGUcggcgaaGGGGGcacuGCGCu -3' miRNA: 3'- gCUGCuUAUUGCUGCG-------CCCCU----CGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 39387 | 0.7 | 0.81643 |
Target: 5'- aGACG-AUGACGACGUcggcgaaGGGGGcacuGCGCu -3' miRNA: 3'- gCUGCuUAUUGCUGCG-------CCCCU----CGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 43874 | 0.7 | 0.808628 |
Target: 5'- aGACGGA--ACGAgCGCGgcaaaGGGGGCGCc -3' miRNA: 3'- gCUGCUUauUGCU-GCGC-----CCCUCGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 18626 | 0.7 | 0.808628 |
Target: 5'- -uGCGAaaGUGACGugGUGGGGuGcCGCc -3' miRNA: 3'- gcUGCU--UAUUGCugCGCCCCuC-GCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 16562 | 0.7 | 0.79981 |
Target: 5'- -cGCGGugGGCGGCGcCGGGGcggcGGCGCAc -3' miRNA: 3'- gcUGCUuaUUGCUGC-GCCCC----UCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 157692 | 0.71 | 0.781733 |
Target: 5'- gGACGAu--GCGGCGCGGcc-GCGCAu -3' miRNA: 3'- gCUGCUuauUGCUGCGCCccuCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 161305 | 0.71 | 0.781733 |
Target: 5'- cCGGCGcGGUcAACGcCGCGGGGccccaaaaaacGGCGCAg -3' miRNA: 3'- -GCUGC-UUA-UUGCuGCGCCCC-----------UCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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