Results 81 - 100 of 111 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 42278 | 0.71 | 0.781733 |
Target: 5'- cCGGCGcGGUcAACGcCGCGGGGccccaaaaaacGGCGCAg -3' miRNA: 3'- -GCUGC-UUA-UUGCuGCGCCCC-----------UCGCGU- -5' |
|||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 151859 | 0.71 | 0.781733 |
Target: 5'- cCGGCGGc-GAC-ACGUGGGGGGCGUc -3' miRNA: 3'- -GCUGCUuaUUGcUGCGCCCCUCGCGu -5' |
|||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 55549 | 0.71 | 0.781733 |
Target: 5'- gCGACGGaaGUAcUGGaGgGGGGAGCGCGg -3' miRNA: 3'- -GCUGCU--UAUuGCUgCgCCCCUCGCGU- -5' |
|||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 150986 | 0.71 | 0.753648 |
Target: 5'- -cGCGAGUGGCGGCGaCGGGccGCGUg -3' miRNA: 3'- gcUGCUUAUUGCUGC-GCCCcuCGCGu -5' |
|||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 31959 | 0.71 | 0.753648 |
Target: 5'- -cGCGAGUGGCGGCGaCGGGccGCGUg -3' miRNA: 3'- gcUGCUUAUUGCUGC-GCCCcuCGCGu -5' |
|||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 122753 | 0.71 | 0.741169 |
Target: 5'- gCGACGAGgaaGACGACgaggaGCGGGGccucuugccgccggGGCGCu -3' miRNA: 3'- -GCUGCUUa--UUGCUG-----CGCCCC--------------UCGCGu -5' |
|||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 6465 | 0.71 | 0.734382 |
Target: 5'- uCGGCGGcgcGGCGaACGuCGGGGuGCGCGg -3' miRNA: 3'- -GCUGCUua-UUGC-UGC-GCCCCuCGCGU- -5' |
|||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 131598 | 0.71 | 0.734382 |
Target: 5'- uGugGAGggAGCGGCGCGcguGGGcGCGCGc -3' miRNA: 3'- gCugCUUa-UUGCUGCGC---CCCuCGCGU- -5' |
|||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 125492 | 0.71 | 0.734382 |
Target: 5'- uCGGCGGcgcGGCGaACGuCGGGGuGCGCGg -3' miRNA: 3'- -GCUGCUua-UUGC-UGC-GCCCCuCGCGU- -5' |
|||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 35962 | 0.72 | 0.724613 |
Target: 5'- cCGACG-AUGGCGAuuCGCcuggaGGGGGCGCGg -3' miRNA: 3'- -GCUGCuUAUUGCU--GCGc----CCCUCGCGU- -5' |
|||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 25946 | 0.72 | 0.704849 |
Target: 5'- gCGACGAAgaugagGACGGCGCGGacGuGUGCAc -3' miRNA: 3'- -GCUGCUUa-----UUGCUGCGCCc-CuCGCGU- -5' |
|||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 145863 | 0.72 | 0.704849 |
Target: 5'- cCGGCGGAguuuGCGaACGgGGGuGGGUGCAa -3' miRNA: 3'- -GCUGCUUau--UGC-UGCgCCC-CUCGCGU- -5' |
|||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 74895 | 0.72 | 0.68886 |
Target: 5'- uCGACGAucguGCGAuuCGCguagaagccauuuacGGGGAGCGCGu -3' miRNA: 3'- -GCUGCUuau-UGCU--GCG---------------CCCCUCGCGU- -5' |
|||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 25618 | 0.72 | 0.684843 |
Target: 5'- aGACGAagAUGAUGACGCGGuuaagcuuaGGGGCGa- -3' miRNA: 3'- gCUGCU--UAUUGCUGCGCC---------CCUCGCgu -5' |
|||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 2881 | 0.73 | 0.674771 |
Target: 5'- uCGAcCGGGgcGCGGCgcgGCGGGGAGgGCGa -3' miRNA: 3'- -GCU-GCUUauUGCUG---CGCCCCUCgCGU- -5' |
|||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 121907 | 0.73 | 0.674771 |
Target: 5'- uCGAcCGGGgcGCGGCgcgGCGGGGAGgGCGa -3' miRNA: 3'- -GCU-GCUUauUGCUG---CGCCCCUCgCGU- -5' |
|||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 40782 | 0.73 | 0.664664 |
Target: 5'- aGACGc--AGCGGCgcugcaaacuGCGGGGGGCGCu -3' miRNA: 3'- gCUGCuuaUUGCUG----------CGCCCCUCGCGu -5' |
|||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 159808 | 0.73 | 0.664664 |
Target: 5'- aGACGc--AGCGGCgcugcaaacuGCGGGGGGCGCu -3' miRNA: 3'- gCUGCuuaUUGCUG----------CGCCCCUCGCGu -5' |
|||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 41053 | 0.73 | 0.654532 |
Target: 5'- aGACGGu--ACGGCGCcgGGGGAcGCGCc -3' miRNA: 3'- gCUGCUuauUGCUGCG--CCCCU-CGCGu -5' |
|||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 160080 | 0.73 | 0.654532 |
Target: 5'- aGACGGu--ACGGCGCcgGGGGAcGCGCc -3' miRNA: 3'- gCUGCUuauUGCUGCG--CCCCU-CGCGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home